miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 12221 0.7 0.231017
Target:  5'- gGCGCGCCGGAuuucacgccaaacCUGAUcaagGGCuuCGACGAc- -3'
miRNA:   3'- -CGCGCGGCCU-------------GACUG----CCG--GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 12888 0.66 0.423706
Target:  5'- cCGUGCgCGaGCUGAuCGGCaCGGCGAg- -3'
miRNA:   3'- cGCGCG-GCcUGACU-GCCG-GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 13399 0.72 0.172912
Target:  5'- gGCGCGgCGGACgucGGCGGCaagccgcugcugaCGACGAg- -3'
miRNA:   3'- -CGCGCgGCCUGa--CUGCCG-------------GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 14092 0.74 0.128559
Target:  5'- gGCuGCGCCGG-C-GGCGcGCCGGCGGUUg -3'
miRNA:   3'- -CG-CGCGGCCuGaCUGC-CGGCUGCUAA- -5'
28143 3' -59.8 NC_005887.1 + 14681 0.7 0.214262
Target:  5'- aGCGCGCCcucGACggcgccGACGGCCGuACGcgUa -3'
miRNA:   3'- -CGCGCGGc--CUGa-----CUGCCGGC-UGCuaA- -5'
28143 3' -59.8 NC_005887.1 + 14711 0.69 0.27671
Target:  5'- gGCGgGCCGGGC--GCGGCgaucgcgcaggCGACGAUc -3'
miRNA:   3'- -CGCgCGGCCUGacUGCCG-----------GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 15932 0.67 0.369769
Target:  5'- cGCGgGCCGGAaucGAUGcGCCGGCc--- -3'
miRNA:   3'- -CGCgCGGCCUga-CUGC-CGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 17684 0.67 0.336513
Target:  5'- gGCGaCGUCGGcACgauguucgUGACGGCCGGCu--- -3'
miRNA:   3'- -CGC-GCGGCC-UG--------ACUGCCGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 18035 1.08 0.000343
Target:  5'- cGCGCGCCGGACUGACGGCCGACGAUUg -3'
miRNA:   3'- -CGCGCGGCCUGACUGCCGGCUGCUAA- -5'
28143 3' -59.8 NC_005887.1 + 18379 0.68 0.328547
Target:  5'- gGCGCGCCGGcGCUcgcgaacccGAUGGCCuACGc-- -3'
miRNA:   3'- -CGCGCGGCC-UGA---------CUGCCGGcUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 19810 0.67 0.378427
Target:  5'- gGCGCGaCCGGAaacgGGgGcGUCGACGAc- -3'
miRNA:   3'- -CGCGC-GGCCUga--CUgC-CGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 21877 0.67 0.344618
Target:  5'- gGCGCGcCCGGcaGCgccgcgGACGucguguugauGCCGGCGAUg -3'
miRNA:   3'- -CGCGC-GGCC--UGa-----CUGC----------CGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 22941 0.76 0.092042
Target:  5'- aGCGCGCgaGGAuCUGauaGCGGCCGGCGGc- -3'
miRNA:   3'- -CGCGCGg-CCU-GAC---UGCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 23502 0.66 0.414392
Target:  5'- aGCG-GCgGGAUggcgGGCGGCugCGACGAg- -3'
miRNA:   3'- -CGCgCGgCCUGa---CUGCCG--GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 23648 0.73 0.143462
Target:  5'- aGCGCGUCGuagucgcguucGcACUGcCGGCCGGCGAUg -3'
miRNA:   3'- -CGCGCGGC-----------C-UGACuGCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 24950 0.67 0.352864
Target:  5'- cGUGCGCgCGGGCcGccuugcgcGCGGCCG-CGAg- -3'
miRNA:   3'- -CGCGCG-GCCUGaC--------UGCCGGCuGCUaa -5'
28143 3' -59.8 NC_005887.1 + 25497 0.66 0.396146
Target:  5'- gGCG-GCuCGGAC-GAUGGCgCGGCGGg- -3'
miRNA:   3'- -CGCgCG-GCCUGaCUGCCG-GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 26141 0.67 0.361247
Target:  5'- cCGCGCgGGccGCUGACGcGCUGACc--- -3'
miRNA:   3'- cGCGCGgCC--UGACUGC-CGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 26791 0.67 0.361247
Target:  5'- cGUGCGcCCGGucuaugucgaGCUGcccGCGGCCGcGCGAc- -3'
miRNA:   3'- -CGCGC-GGCC----------UGAC---UGCCGGC-UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 27768 0.67 0.336513
Target:  5'- aGCGCGCCGGcgagguagagcGCcaUGACGacggcGCCGACGc-- -3'
miRNA:   3'- -CGCGCGGCC-----------UG--ACUGC-----CGGCUGCuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.