miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 11386 0.82 0.02837
Target:  5'- aGCGCaGCCGGagcGCUGGCGGCCGGCGc-- -3'
miRNA:   3'- -CGCG-CGGCC---UGACUGCCGGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 8347 0.75 0.108874
Target:  5'- cGCGUGCCGu-CUGGCGGCCGaagccuGCGAa- -3'
miRNA:   3'- -CGCGCGGCcuGACUGCCGGC------UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 35333 0.72 0.164303
Target:  5'- cGCGCGCCGcGGCgGcCGGCC-ACGAg- -3'
miRNA:   3'- -CGCGCGGC-CUGaCuGCCGGcUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 11224 0.72 0.164303
Target:  5'- cGUGCGCCGGAaauauACGGUCGAUGGc- -3'
miRNA:   3'- -CGCGCGGCCUgac--UGCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 13399 0.72 0.172912
Target:  5'- gGCGCGgCGGACgucGGCGGCaagccgcugcugaCGACGAg- -3'
miRNA:   3'- -CGCGCgGCCUGa--CUGCCG-------------GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 4773 0.71 0.192872
Target:  5'- -aGCGCgGGaaGCUGACGccaGCCGGCGAg- -3'
miRNA:   3'- cgCGCGgCC--UGACUGC---CGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 4405 0.7 0.214262
Target:  5'- uGCGCGCCGG-C-GAaGGCgCGGCGAUc -3'
miRNA:   3'- -CGCGCGGCCuGaCUgCCG-GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 882 0.7 0.219918
Target:  5'- cGCGcCGCCGGACgagucaGGCGGCCu-CGGc- -3'
miRNA:   3'- -CGC-GCGGCCUGa-----CUGCCGGcuGCUaa -5'
28143 3' -59.8 NC_005887.1 + 28544 0.69 0.267833
Target:  5'- cGCGCGCCGGGCUGcugaauuuguagGCGucGCCGcccgcugcgcggacGCGGUc -3'
miRNA:   3'- -CGCGCGGCCUGAC------------UGC--CGGC--------------UGCUAa -5'
28143 3' -59.8 NC_005887.1 + 40767 0.69 0.26315
Target:  5'- gGCGCGCCGcGCgccGcCGaGCCGGCGGUc -3'
miRNA:   3'- -CGCGCGGCcUGa--CuGC-CGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 5160 0.69 0.26315
Target:  5'- gGCGCGCCGcugauGCUGAUGGCaCGcguCGAg- -3'
miRNA:   3'- -CGCGCGGCc----UGACUGCCG-GCu--GCUaa -5'
28143 3' -59.8 NC_005887.1 + 37472 0.69 0.250135
Target:  5'- aGUGCGCCGGAUgcGAUcaGGgCGGCGGUc -3'
miRNA:   3'- -CGCGCGGCCUGa-CUG--CCgGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 10224 0.7 0.243829
Target:  5'- cCGCGCCGGAC-GGCGcGuCUGAUGAc- -3'
miRNA:   3'- cGCGCGGCCUGaCUGC-C-GGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 35144 0.7 0.243829
Target:  5'- -gGCGCCacGGACgGGCGGCCGucacgcugcACGAUc -3'
miRNA:   3'- cgCGCGG--CCUGaCUGCCGGC---------UGCUAa -5'
28143 3' -59.8 NC_005887.1 + 12221 0.7 0.231017
Target:  5'- gGCGCGCCGGAuuucacgccaaacCUGAUcaagGGCuuCGACGAc- -3'
miRNA:   3'- -CGCGCGGCCU-------------GACUG----CCG--GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 32362 0.76 0.089488
Target:  5'- gGCGCGCCGG-CUGGC--CCGACGAUc -3'
miRNA:   3'- -CGCGCGGCCuGACUGccGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 23502 0.66 0.414392
Target:  5'- aGCG-GCgGGAUggcgGGCGGCugCGACGAg- -3'
miRNA:   3'- -CGCgCGgCCUGa---CUGCCG--GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 10081 0.66 0.396146
Target:  5'- aGCGCgGCCGcGCgUGAugUGGUCGGCGAUc -3'
miRNA:   3'- -CGCG-CGGCcUG-ACU--GCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 28399 0.66 0.38722
Target:  5'- cCGCGCCGGcGCaGACG-CCGACa--- -3'
miRNA:   3'- cGCGCGGCC-UGaCUGCcGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 8520 0.67 0.378427
Target:  5'- uUGCGCCGGGCgcucgaucgcguUGACGcggaucGCuCGGCGAUa -3'
miRNA:   3'- cGCGCGGCCUG------------ACUGC------CG-GCUGCUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.