miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 33883 0.67 0.352864
Target:  5'- cCGCGCCGacCUGACacccgcgugguGGCCGugGGUc -3'
miRNA:   3'- cGCGCGGCcuGACUG-----------CCGGCugCUAa -5'
28143 3' -59.8 NC_005887.1 + 24950 0.67 0.352864
Target:  5'- cGUGCGCgCGGGCcGccuugcgcGCGGCCG-CGAg- -3'
miRNA:   3'- -CGCGCG-GCCUGaC--------UGCCGGCuGCUaa -5'
28143 3' -59.8 NC_005887.1 + 21877 0.67 0.344618
Target:  5'- gGCGCGcCCGGcaGCgccgcgGACGucguguugauGCCGGCGAUg -3'
miRNA:   3'- -CGCGC-GGCC--UGa-----CUGC----------CGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 27768 0.67 0.336513
Target:  5'- aGCGCGCCGGcgagguagagcGCcaUGACGacggcGCCGACGc-- -3'
miRNA:   3'- -CGCGCGGCC-----------UG--ACUGC-----CGGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 17684 0.67 0.336513
Target:  5'- gGCGaCGUCGGcACgauguucgUGACGGCCGGCu--- -3'
miRNA:   3'- -CGC-GCGGCC-UG--------ACUGCCGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 36221 0.67 0.336513
Target:  5'- aCGCGCCGcGACgagGAaacCGGCgaGACGAUc -3'
miRNA:   3'- cGCGCGGC-CUGa--CU---GCCGg-CUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 18379 0.68 0.328547
Target:  5'- gGCGCGCCGGcGCUcgcgaacccGAUGGCCuACGc-- -3'
miRNA:   3'- -CGCGCGGCC-UGA---------CUGCCGGcUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 41700 0.68 0.320721
Target:  5'- uGCGCGagGGGCucaucaaggcgaUGACGGgCGGCGAUc -3'
miRNA:   3'- -CGCGCggCCUG------------ACUGCCgGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 30488 0.68 0.313036
Target:  5'- cCGaCGUCGGcCUGAUGGUgGGCGAa- -3'
miRNA:   3'- cGC-GCGGCCuGACUGCCGgCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 12069 0.68 0.313036
Target:  5'- cGUGCGCCGGAUgucugcaacGugGGCgCGACc--- -3'
miRNA:   3'- -CGCGCGGCCUGa--------CugCCG-GCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 10337 0.68 0.302512
Target:  5'- -aGCGCaCGGucugcccguugacCUGGCGGCgGACGAUc -3'
miRNA:   3'- cgCGCG-GCCu------------GACUGCCGgCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 31362 0.68 0.301031
Target:  5'- gGUGCGCCGaugccggucgagcucGACgagGcgaucgacGCGGCCGACGAg- -3'
miRNA:   3'- -CGCGCGGC---------------CUGa--C--------UGCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 41084 0.69 0.279488
Target:  5'- cGCGCGCUcguggacgaggcagaGGaACUgcaGACGGCCGAgGAa- -3'
miRNA:   3'- -CGCGCGG---------------CC-UGA---CUGCCGGCUgCUaa -5'
28143 3' -59.8 NC_005887.1 + 14711 0.69 0.27671
Target:  5'- gGCGgGCCGGGC--GCGGCgaucgcgcaggCGACGAUc -3'
miRNA:   3'- -CGCgCGGCCUGacUGCCG-----------GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 40695 0.69 0.27671
Target:  5'- cGCGCGCaCGG-CUGGCaggaGCCGAuCGAa- -3'
miRNA:   3'- -CGCGCG-GCCuGACUGc---CGGCU-GCUaa -5'
28143 3' -59.8 NC_005887.1 + 10998 0.69 0.269861
Target:  5'- uGCGCGUaauCGGGCgUGAgcaggcCGGCCGACGu-- -3'
miRNA:   3'- -CGCGCG---GCCUG-ACU------GCCGGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 40739 0.69 0.269184
Target:  5'- cGCGCGCCaggugcaGGAUgguGCGGCCGGUGAUc -3'
miRNA:   3'- -CGCGCGG-------CCUGac-UGCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 28544 0.69 0.267833
Target:  5'- cGCGCGCCGGGCUGcugaauuuguagGCGucGCCGcccgcugcgcggacGCGGUc -3'
miRNA:   3'- -CGCGCGGCCUGAC------------UGC--CGGC--------------UGCUAa -5'
28143 3' -59.8 NC_005887.1 + 40767 0.69 0.26315
Target:  5'- gGCGCGCCGcGCgccGcCGaGCCGGCGGUc -3'
miRNA:   3'- -CGCGCGGCcUGa--CuGC-CGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 5160 0.69 0.26315
Target:  5'- gGCGCGCCGcugauGCUGAUGGCaCGcguCGAg- -3'
miRNA:   3'- -CGCGCGGCc----UGACUGCCG-GCu--GCUaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.