Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28143 | 3' | -59.8 | NC_005887.1 | + | 33883 | 0.67 | 0.352864 |
Target: 5'- cCGCGCCGacCUGACacccgcgugguGGCCGugGGUc -3' miRNA: 3'- cGCGCGGCcuGACUG-----------CCGGCugCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 24950 | 0.67 | 0.352864 |
Target: 5'- cGUGCGCgCGGGCcGccuugcgcGCGGCCG-CGAg- -3' miRNA: 3'- -CGCGCG-GCCUGaC--------UGCCGGCuGCUaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 21877 | 0.67 | 0.344618 |
Target: 5'- gGCGCGcCCGGcaGCgccgcgGACGucguguugauGCCGGCGAUg -3' miRNA: 3'- -CGCGC-GGCC--UGa-----CUGC----------CGGCUGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 27768 | 0.67 | 0.336513 |
Target: 5'- aGCGCGCCGGcgagguagagcGCcaUGACGacggcGCCGACGc-- -3' miRNA: 3'- -CGCGCGGCC-----------UG--ACUGC-----CGGCUGCuaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 17684 | 0.67 | 0.336513 |
Target: 5'- gGCGaCGUCGGcACgauguucgUGACGGCCGGCu--- -3' miRNA: 3'- -CGC-GCGGCC-UG--------ACUGCCGGCUGcuaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 36221 | 0.67 | 0.336513 |
Target: 5'- aCGCGCCGcGACgagGAaacCGGCgaGACGAUc -3' miRNA: 3'- cGCGCGGC-CUGa--CU---GCCGg-CUGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 18379 | 0.68 | 0.328547 |
Target: 5'- gGCGCGCCGGcGCUcgcgaacccGAUGGCCuACGc-- -3' miRNA: 3'- -CGCGCGGCC-UGA---------CUGCCGGcUGCuaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 41700 | 0.68 | 0.320721 |
Target: 5'- uGCGCGagGGGCucaucaaggcgaUGACGGgCGGCGAUc -3' miRNA: 3'- -CGCGCggCCUG------------ACUGCCgGCUGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 30488 | 0.68 | 0.313036 |
Target: 5'- cCGaCGUCGGcCUGAUGGUgGGCGAa- -3' miRNA: 3'- cGC-GCGGCCuGACUGCCGgCUGCUaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 12069 | 0.68 | 0.313036 |
Target: 5'- cGUGCGCCGGAUgucugcaacGugGGCgCGACc--- -3' miRNA: 3'- -CGCGCGGCCUGa--------CugCCG-GCUGcuaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 10337 | 0.68 | 0.302512 |
Target: 5'- -aGCGCaCGGucugcccguugacCUGGCGGCgGACGAUc -3' miRNA: 3'- cgCGCG-GCCu------------GACUGCCGgCUGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 31362 | 0.68 | 0.301031 |
Target: 5'- gGUGCGCCGaugccggucgagcucGACgagGcgaucgacGCGGCCGACGAg- -3' miRNA: 3'- -CGCGCGGC---------------CUGa--C--------UGCCGGCUGCUaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 41084 | 0.69 | 0.279488 |
Target: 5'- cGCGCGCUcguggacgaggcagaGGaACUgcaGACGGCCGAgGAa- -3' miRNA: 3'- -CGCGCGG---------------CC-UGA---CUGCCGGCUgCUaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 14711 | 0.69 | 0.27671 |
Target: 5'- gGCGgGCCGGGC--GCGGCgaucgcgcaggCGACGAUc -3' miRNA: 3'- -CGCgCGGCCUGacUGCCG-----------GCUGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 40695 | 0.69 | 0.27671 |
Target: 5'- cGCGCGCaCGG-CUGGCaggaGCCGAuCGAa- -3' miRNA: 3'- -CGCGCG-GCCuGACUGc---CGGCU-GCUaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 10998 | 0.69 | 0.269861 |
Target: 5'- uGCGCGUaauCGGGCgUGAgcaggcCGGCCGACGu-- -3' miRNA: 3'- -CGCGCG---GCCUG-ACU------GCCGGCUGCuaa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 40739 | 0.69 | 0.269184 |
Target: 5'- cGCGCGCCaggugcaGGAUgguGCGGCCGGUGAUc -3' miRNA: 3'- -CGCGCGG-------CCUGac-UGCCGGCUGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 28544 | 0.69 | 0.267833 |
Target: 5'- cGCGCGCCGGGCUGcugaauuuguagGCGucGCCGcccgcugcgcggacGCGGUc -3' miRNA: 3'- -CGCGCGGCCUGAC------------UGC--CGGC--------------UGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 40767 | 0.69 | 0.26315 |
Target: 5'- gGCGCGCCGcGCgccGcCGaGCCGGCGGUc -3' miRNA: 3'- -CGCGCGGCcUGa--CuGC-CGGCUGCUAa -5' |
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28143 | 3' | -59.8 | NC_005887.1 | + | 5160 | 0.69 | 0.26315 |
Target: 5'- gGCGCGCCGcugauGCUGAUGGCaCGcguCGAg- -3' miRNA: 3'- -CGCGCGGCc----UGACUGCCG-GCu--GCUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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