miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 18427 1.1 0.00052
Target:  5'- gUCAGCACGACGCUGAUCGGCGCGAUCu -3'
miRNA:   3'- -AGUCGUGCUGCGACUAGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 17538 0.79 0.086694
Target:  5'- gCGGCAUGACGUcGGUCGGCGCGu-- -3'
miRNA:   3'- aGUCGUGCUGCGaCUAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 14223 0.79 0.097326
Target:  5'- gCGGCGCcGCGCUGuUCGGCGCGGc- -3'
miRNA:   3'- aGUCGUGcUGCGACuAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 23364 0.79 0.089244
Target:  5'- gCAGUGCGGCGUUGuucuUCGGCGCGggCu -3'
miRNA:   3'- aGUCGUGCUGCGACu---AGCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 28261 0.78 0.103094
Target:  5'- --cGCGCGGCGCUGAUgCGGCGCa--- -3'
miRNA:   3'- aguCGUGCUGCGACUA-GCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 21389 0.78 0.109182
Target:  5'- cCGGC-CGAUGC-GGUCGGCGCGGUg -3'
miRNA:   3'- aGUCGuGCUGCGaCUAGCCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 21066 0.77 0.137051
Target:  5'- gUCGGCGCcggugugggguGGCGUUGGcuugaacgguaUCGGCGCGGUCg -3'
miRNA:   3'- -AGUCGUG-----------CUGCGACU-----------AGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 39869 0.76 0.157652
Target:  5'- cCAGCagugcgaagugACGACGCgcgcaacGAUCGGCGCGAg- -3'
miRNA:   3'- aGUCG-----------UGCUGCGa------CUAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 12802 0.75 0.162095
Target:  5'- gCAGCGCGGCGC-GAUCGaGCGCa--- -3'
miRNA:   3'- aGUCGUGCUGCGaCUAGC-CGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 5984 0.75 0.186038
Target:  5'- gCAGCACGAucaagauguuuuCGCaGAUCGGUGCG-UCg -3'
miRNA:   3'- aGUCGUGCU------------GCGaCUAGCCGCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 37394 0.75 0.16665
Target:  5'- uUCAGCugG-CGCUGcgCGGuCGCGAc- -3'
miRNA:   3'- -AGUCGugCuGCGACuaGCC-GCGCUag -5'
28144 5' -56.1 NC_005887.1 + 40721 0.74 0.201858
Target:  5'- -uGGUGCGGcCGgUGAUCGGCGCGcgCu -3'
miRNA:   3'- agUCGUGCU-GCgACUAGCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 4281 0.74 0.211333
Target:  5'- gCAGCACGccuuucuccugcgcGCGCUGcagcacuUCGGuCGCGGUCa -3'
miRNA:   3'- aGUCGUGC--------------UGCGACu------AGCC-GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 16210 0.74 0.191186
Target:  5'- cUCGGCGCGcCGgUGGUUGGCGgGGUg -3'
miRNA:   3'- -AGUCGUGCuGCgACUAGCCGCgCUAg -5'
28144 5' -56.1 NC_005887.1 + 27667 0.74 0.191186
Target:  5'- aUCAGCgccuucgacACGACGCUcGA-CGGCGCGcUCg -3'
miRNA:   3'- -AGUCG---------UGCUGCGA-CUaGCCGCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 12263 0.74 0.191186
Target:  5'- cCGGCGCGGCGCUG-UCcuuCGCGGUCu -3'
miRNA:   3'- aGUCGUGCUGCGACuAGcc-GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 15830 0.74 0.196459
Target:  5'- -aGGUGCaGCGCuUGcgCGGCGCGAUCg -3'
miRNA:   3'- agUCGUGcUGCG-ACuaGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 4620 0.74 0.191186
Target:  5'- cUCGcCGCGGCGCcGGUggccgcCGGCGCGAUCa -3'
miRNA:   3'- -AGUcGUGCUGCGaCUA------GCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 1486 0.74 0.191186
Target:  5'- aCGGCguGCGGCGCUcGcgCGGCGCGGc- -3'
miRNA:   3'- aGUCG--UGCUGCGA-CuaGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 10979 0.73 0.237017
Target:  5'- aUCGGCugGACGCUcGUCgaggauGGCGUGGUg -3'
miRNA:   3'- -AGUCGugCUGCGAcUAG------CCGCGCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.