miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 3' -50.5 NC_005887.1 + 42164 0.68 0.819538
Target:  5'- uCGUUCGUcGACGCGGcAUCGCGccccacGCGAc -3'
miRNA:   3'- -GCAAGCGcUUGCGUCaUGGUGU------UGCU- -5'
28145 3' -50.5 NC_005887.1 + 42089 0.66 0.89646
Target:  5'- --gUCGCGugggGCGCGaUGCCGCGucgACGAa -3'
miRNA:   3'- gcaAGCGCu---UGCGUcAUGGUGU---UGCU- -5'
28145 3' -50.5 NC_005887.1 + 39479 0.66 0.903645
Target:  5'- -aUUCGCGAgaugccgaACGCGGUcgcgACCACGguuGCGc -3'
miRNA:   3'- gcAAGCGCU--------UGCGUCA----UGGUGU---UGCu -5'
28145 3' -50.5 NC_005887.1 + 38118 0.68 0.829077
Target:  5'- --aUCGCGA--GCAGgaaaacaACCGCGGCGAu -3'
miRNA:   3'- gcaAGCGCUugCGUCa------UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 37569 0.74 0.457226
Target:  5'- aGUUgGCGGcuCGCGGaGCCGCGGCGGa -3'
miRNA:   3'- gCAAgCGCUu-GCGUCaUGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 37070 0.66 0.881223
Target:  5'- uGUUCGCGuacggccuGCGC-GUGCuCGcCGGCGAg -3'
miRNA:   3'- gCAAGCGCu-------UGCGuCAUG-GU-GUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 36717 0.66 0.89646
Target:  5'- --aUCGaaaagauGGGCGCAG-ACCACGACGc -3'
miRNA:   3'- gcaAGCg------CUUGCGUCaUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 36490 0.7 0.6805
Target:  5'- gGUUCGCGAucaccggaaccGUGCGGUcgACCGCAGCa- -3'
miRNA:   3'- gCAAGCGCU-----------UGCGUCA--UGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 36328 0.67 0.83839
Target:  5'- aGUaCGCGGACGaAGgcacgGCCGCGcACGAg -3'
miRNA:   3'- gCAaGCGCUUGCgUCa----UGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 34708 0.7 0.714364
Target:  5'- cCGUcgUCGCGcuUGCGGUG-CGCGGCGAu -3'
miRNA:   3'- -GCA--AGCGCuuGCGUCAUgGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 33707 0.66 0.881223
Target:  5'- --cUCGcCGAGCGCAGcGCgCGCuACGGg -3'
miRNA:   3'- gcaAGC-GCUUGCGUCaUG-GUGuUGCU- -5'
28145 3' -50.5 NC_005887.1 + 33408 0.71 0.6347
Target:  5'- --aUCGCGGuGCGUAGaUACCGCGAcCGAg -3'
miRNA:   3'- gcaAGCGCU-UGCGUC-AUGGUGUU-GCU- -5'
28145 3' -50.5 NC_005887.1 + 32555 0.73 0.543629
Target:  5'- -uUUUGUGAGCGguGccUACUACAACGAg -3'
miRNA:   3'- gcAAGCGCUUGCguC--AUGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 32108 0.66 0.89646
Target:  5'- cCGUcUGCGGGCGuCGGUGCCccgcACAucCGAg -3'
miRNA:   3'- -GCAaGCGCUUGC-GUCAUGG----UGUu-GCU- -5'
28145 3' -50.5 NC_005887.1 + 28248 0.67 0.856297
Target:  5'- -cUUCGCGAgcgGCGCuucACCACuGACGAg -3'
miRNA:   3'- gcAAGCGCU---UGCGucaUGGUG-UUGCU- -5'
28145 3' -50.5 NC_005887.1 + 27307 0.72 0.611737
Target:  5'- cCGgcgCGCG-AUGCAGUugCGCcGCGAu -3'
miRNA:   3'- -GCaa-GCGCuUGCGUCAugGUGuUGCU- -5'
28145 3' -50.5 NC_005887.1 + 26601 0.67 0.844769
Target:  5'- cCGUUCGCGAGCuGCAGgcauuucaucgucuUGCuCGCcGCGu -3'
miRNA:   3'- -GCAAGCGCUUG-CGUC--------------AUG-GUGuUGCu -5'
28145 3' -50.5 NC_005887.1 + 26407 0.66 0.910536
Target:  5'- aUGUUCGCGcacccggccAGCGCcg-GCCACGGCc- -3'
miRNA:   3'- -GCAAGCGC---------UUGCGucaUGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 23578 0.67 0.864872
Target:  5'- cCGgcagUGCGAACGCG--ACUACGACGc -3'
miRNA:   3'- -GCaa--GCGCUUGCGUcaUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 23498 0.69 0.758219
Target:  5'- ---gCGgGAugGCGGgcgGCUGCGACGAg -3'
miRNA:   3'- gcaaGCgCUugCGUCa--UGGUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.