miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 3' -50.5 NC_005887.1 + 23578 0.67 0.864872
Target:  5'- cCGgcagUGCGAACGCG--ACUACGACGc -3'
miRNA:   3'- -GCaa--GCGCUUGCGUcaUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 8784 0.67 0.864872
Target:  5'- uCGUggcCGCGAcgaaGCGCuuaccGCCGCGGCGGa -3'
miRNA:   3'- -GCAa--GCGCU----UGCGuca--UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 28248 0.67 0.856297
Target:  5'- -cUUCGCGAgcgGCGCuucACCACuGACGAg -3'
miRNA:   3'- gcAAGCGCU---UGCGucaUGGUG-UUGCU- -5'
28145 3' -50.5 NC_005887.1 + 4030 0.67 0.847466
Target:  5'- uCGUUCGCGAGCaacgGCGGgu---CGACGAg -3'
miRNA:   3'- -GCAAGCGCUUG----CGUCaugguGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 26601 0.67 0.844769
Target:  5'- cCGUUCGCGAGCuGCAGgcauuucaucgucuUGCuCGCcGCGu -3'
miRNA:   3'- -GCAAGCGCUUG-CGUC--------------AUG-GUGuUGCu -5'
28145 3' -50.5 NC_005887.1 + 36328 0.67 0.83839
Target:  5'- aGUaCGCGGACGaAGgcacgGCCGCGcACGAg -3'
miRNA:   3'- gCAaGCGCUUGCgUCa----UGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 17864 0.68 0.830018
Target:  5'- --cUCGCGAcgACGUGGgcccggaaccuguccGCCGCGACGAu -3'
miRNA:   3'- gcaAGCGCU--UGCGUCa--------------UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 22506 0.68 0.829077
Target:  5'- aCGUUCGUGAcggcaauccacAUGCAGaACagcagCACGACGAg -3'
miRNA:   3'- -GCAAGCGCU-----------UGCGUCaUG-----GUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 38118 0.68 0.829077
Target:  5'- --aUCGCGA--GCAGgaaaacaACCGCGGCGAu -3'
miRNA:   3'- gcaAGCGCUugCGUCa------UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 42164 0.68 0.819538
Target:  5'- uCGUUCGUcGACGCGGcAUCGCGccccacGCGAc -3'
miRNA:   3'- -GCAAGCGcUUGCGUCaUGGUGU------UGCU- -5'
28145 3' -50.5 NC_005887.1 + 7472 0.68 0.809785
Target:  5'- cCGUUCGCGAACG-AGcGCUACcuGCGc -3'
miRNA:   3'- -GCAAGCGCUUGCgUCaUGGUGu-UGCu -5'
28145 3' -50.5 NC_005887.1 + 18442 0.68 0.799829
Target:  5'- gGUUCGCGAGCGCcGgcgcGCCGuCuacGCGGa -3'
miRNA:   3'- gCAAGCGCUUGCGuCa---UGGU-Gu--UGCU- -5'
28145 3' -50.5 NC_005887.1 + 15532 0.68 0.789682
Target:  5'- uCGaaCGCGucuugguGCGCGGUcAUCGCGGCGAc -3'
miRNA:   3'- -GCaaGCGCu------UGCGUCA-UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 19357 0.69 0.779356
Target:  5'- --cUCGCGcagcaGACGC-GUGCgGCGACGAu -3'
miRNA:   3'- gcaAGCGC-----UUGCGuCAUGgUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 4741 0.69 0.767807
Target:  5'- ---cCGCGAGCaauaccgGCGGUGCUuuuGCGACGAg -3'
miRNA:   3'- gcaaGCGCUUG-------CGUCAUGG---UGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 23498 0.69 0.758219
Target:  5'- ---gCGgGAugGCGGgcgGCUGCGACGAg -3'
miRNA:   3'- gcaaGCgCUugCGUCa--UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 11317 0.69 0.73652
Target:  5'- uCGgcaGCGAGCGCcgcaACCGCGACGGc -3'
miRNA:   3'- -GCaagCGCUUGCGuca-UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 23246 0.69 0.73652
Target:  5'- cCGUgaUCGCGAGCGCgacgagaaAGgcaaGCCACAcACGGg -3'
miRNA:   3'- -GCA--AGCGCUUGCG--------UCa---UGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 3006 0.7 0.714364
Target:  5'- --gUCGCG---GCGGUGCCGCGGCGc -3'
miRNA:   3'- gcaAGCGCuugCGUCAUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 34708 0.7 0.714364
Target:  5'- cCGUcgUCGCGcuUGCGGUG-CGCGGCGAu -3'
miRNA:   3'- -GCA--AGCGCuuGCGUCAUgGUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.