Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28145 | 5' | -65 | NC_005887.1 | + | 18898 | 1.08 | 0.0001 |
Target: 5'- uGGUCGCCCGGCACCGGCAGCCCGCAGc -3' miRNA: 3'- -CCAGCGGGCCGUGGCCGUCGGGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 18617 | 0.78 | 0.028168 |
Target: 5'- cGUUGCUCGGCAgcgcgaUCGGCGGCCCGCu- -3' miRNA: 3'- cCAGCGGGCCGU------GGCCGUCGGGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 35363 | 0.76 | 0.038355 |
Target: 5'- --aCGCCCGGCACCacGCgGGCCUGCAGc -3' miRNA: 3'- ccaGCGGGCCGUGGc-CG-UCGGGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 4620 | 0.74 | 0.052126 |
Target: 5'- -cUCGCCgCGGCGCCGGUGGCCgccggCGCGa -3' miRNA: 3'- ccAGCGG-GCCGUGGCCGUCGG-----GCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 21606 | 0.74 | 0.058243 |
Target: 5'- cGGUCGCCUGcaGCGucgugaauuucCCGGCAGCCgGCGu -3' miRNA: 3'- -CCAGCGGGC--CGU-----------GGCCGUCGGgCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 26921 | 0.73 | 0.063281 |
Target: 5'- cGGU-GCCCGGCggcaacggcuACCGGCAgacgcGCCCGCu- -3' miRNA: 3'- -CCAgCGGGCCG----------UGGCCGU-----CGGGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 23391 | 0.73 | 0.066871 |
Target: 5'- -cUCGCgCUGcCGCUGGCAGCCUGCAGc -3' miRNA: 3'- ccAGCG-GGCcGUGGCCGUCGGGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 5486 | 0.73 | 0.070657 |
Target: 5'- uGGUCGCgCCGgucGCugCGGCGccGCCCGCc- -3' miRNA: 3'- -CCAGCG-GGC---CGugGCCGU--CGGGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 16592 | 0.72 | 0.076725 |
Target: 5'- --gCGCCCacucGGCGCCGGCGGCgaCGCGa -3' miRNA: 3'- ccaGCGGG----CCGUGGCCGUCGg-GCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 13511 | 0.72 | 0.083289 |
Target: 5'- aGGUCG-CCGGCACgGGCAuGCgCGCc- -3' miRNA: 3'- -CCAGCgGGCCGUGgCCGU-CGgGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 25014 | 0.72 | 0.08796 |
Target: 5'- -cUCGCgCCGGCggccGCCGGcCAGCCgGUAGc -3' miRNA: 3'- ccAGCG-GGCCG----UGGCC-GUCGGgCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 33108 | 0.71 | 0.092125 |
Target: 5'- gGGUCGCCCGGCuugcguuccucGCCGuugcgucgguagaaGCAGCcgaccgugCCGCGGc -3' miRNA: 3'- -CCAGCGGGCCG-----------UGGC--------------CGUCG--------GGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 35392 | 0.71 | 0.092879 |
Target: 5'- cGGcCGCCgCGGCGCgCGGCAGUggagcgaUGCAGa -3' miRNA: 3'- -CCaGCGG-GCCGUG-GCCGUCGg------GCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 21891 | 0.71 | 0.092879 |
Target: 5'- uGGcCGUuucauUCGGCGcgcCCGGCAGCgCCGCGGa -3' miRNA: 3'- -CCaGCG-----GGCCGU---GGCCGUCG-GGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 26709 | 0.71 | 0.095436 |
Target: 5'- cGUCGCgCGGcCGCgGGCAGCUCGaCAu -3' miRNA: 3'- cCAGCGgGCC-GUGgCCGUCGGGC-GUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 35571 | 0.71 | 0.098059 |
Target: 5'- cGGcgagCGCCgGGCACaCGGCcuuGGCCuUGCAGa -3' miRNA: 3'- -CCa---GCGGgCCGUG-GCCG---UCGG-GCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 18040 | 0.71 | 0.100749 |
Target: 5'- aGUCgGUgCGGCcgauGCCGGCgAGCCCGCGc -3' miRNA: 3'- cCAG-CGgGCCG----UGGCCG-UCGGGCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 22184 | 0.71 | 0.104634 |
Target: 5'- aGGUCGUuucguuucuguCCGGCGCggcggucgcauauuaCGGUGGCCCGCuGa -3' miRNA: 3'- -CCAGCG-----------GGCCGUG---------------GCCGUCGGGCGuC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 29888 | 0.7 | 0.109245 |
Target: 5'- --aCGCCUcuGGCGCCGcGCAcaCCCGCAGa -3' miRNA: 3'- ccaGCGGG--CCGUGGC-CGUc-GGGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 41431 | 0.7 | 0.112224 |
Target: 5'- cGGUCuGCUCGaacGCuucCCGGCGGCgCGCGGa -3' miRNA: 3'- -CCAG-CGGGC---CGu--GGCCGUCGgGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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