miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 5' -65 NC_005887.1 + 13313 0.67 0.189945
Target:  5'- aGG-CGUUCGGCaacGCCGGCcGCaUCGCGGa -3'
miRNA:   3'- -CCaGCGGGCCG---UGGCCGuCG-GGCGUC- -5'
28145 5' -65 NC_005887.1 + 23467 0.7 0.12162
Target:  5'- cGGaaGCCCGGCAgCCGGCGacGCCCu--- -3'
miRNA:   3'- -CCagCGGGCCGU-GGCCGU--CGGGcguc -5'
28145 5' -65 NC_005887.1 + 32298 0.7 0.124912
Target:  5'- -aUCGUCgGGCcaGCCGGC-GCgCCGCAGu -3'
miRNA:   3'- ccAGCGGgCCG--UGGCCGuCG-GGCGUC- -5'
28145 5' -65 NC_005887.1 + 31293 0.69 0.131744
Target:  5'- cGUCGagcucgaCCGGCAUCGGC-GCaCCGguGg -3'
miRNA:   3'- cCAGCg------GGCCGUGGCCGuCG-GGCguC- -5'
28145 5' -65 NC_005887.1 + 2325 0.69 0.135287
Target:  5'- aGGUCGCUggcaucuaUGGCGauCCGGCGggcgaccagcGCUCGCAGg -3'
miRNA:   3'- -CCAGCGG--------GCCGU--GGCCGU----------CGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 11391 0.68 0.158447
Target:  5'- ---aGCCgGaGCGCUGGCGGCCgGCGc -3'
miRNA:   3'- ccagCGGgC-CGUGGCCGUCGGgCGUc -5'
28145 5' -65 NC_005887.1 + 36438 0.68 0.158447
Target:  5'- --gCGgCCGGCuucuugcccuUCGGcCAGCCCGCAGc -3'
miRNA:   3'- ccaGCgGGCCGu---------GGCC-GUCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 15857 0.68 0.16264
Target:  5'- aGGgaaaCGCCCGcgcgcagcaggcGCACCaGCAGCUCGguGc -3'
miRNA:   3'- -CCa---GCGGGC------------CGUGGcCGUCGGGCguC- -5'
28145 5' -65 NC_005887.1 + 36978 0.68 0.171325
Target:  5'- cGUCGCgCGGgucgagcuCGCCGGCgAGCaCgCGCAGg -3'
miRNA:   3'- cCAGCGgGCC--------GUGGCCG-UCG-G-GCGUC- -5'
28145 5' -65 NC_005887.1 + 37320 0.7 0.12162
Target:  5'- cGGUCGUcgcagcagcgCCGGCACUGGCAucgGUcgCCGCAu -3'
miRNA:   3'- -CCAGCG----------GGCCGUGGCCGU---CG--GGCGUc -5'
28145 5' -65 NC_005887.1 + 22184 0.71 0.104634
Target:  5'- aGGUCGUuucguuucuguCCGGCGCggcggucgcauauuaCGGUGGCCCGCuGa -3'
miRNA:   3'- -CCAGCG-----------GGCCGUG---------------GCCGUCGGGCGuC- -5'
28145 5' -65 NC_005887.1 + 35571 0.71 0.098059
Target:  5'- cGGcgagCGCCgGGCACaCGGCcuuGGCCuUGCAGa -3'
miRNA:   3'- -CCa---GCGGgCCGUG-GCCG---UCGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 18617 0.78 0.028168
Target:  5'- cGUUGCUCGGCAgcgcgaUCGGCGGCCCGCu- -3'
miRNA:   3'- cCAGCGGGCCGU------GGCCGUCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 35363 0.76 0.038355
Target:  5'- --aCGCCCGGCACCacGCgGGCCUGCAGc -3'
miRNA:   3'- ccaGCGGGCCGUGGc-CG-UCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 4620 0.74 0.052126
Target:  5'- -cUCGCCgCGGCGCCGGUGGCCgccggCGCGa -3'
miRNA:   3'- ccAGCGG-GCCGUGGCCGUCGG-----GCGUc -5'
28145 5' -65 NC_005887.1 + 23391 0.73 0.066871
Target:  5'- -cUCGCgCUGcCGCUGGCAGCCUGCAGc -3'
miRNA:   3'- ccAGCG-GGCcGUGGCCGUCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 13511 0.72 0.083289
Target:  5'- aGGUCG-CCGGCACgGGCAuGCgCGCc- -3'
miRNA:   3'- -CCAGCgGGCCGUGgCCGU-CGgGCGuc -5'
28145 5' -65 NC_005887.1 + 25014 0.72 0.08796
Target:  5'- -cUCGCgCCGGCggccGCCGGcCAGCCgGUAGc -3'
miRNA:   3'- ccAGCG-GGCCG----UGGCC-GUCGGgCGUC- -5'
28145 5' -65 NC_005887.1 + 33108 0.71 0.092125
Target:  5'- gGGUCGCCCGGCuugcguuccucGCCGuugcgucgguagaaGCAGCcgaccgugCCGCGGc -3'
miRNA:   3'- -CCAGCGGGCCG-----------UGGC--------------CGUCG--------GGCGUC- -5'
28145 5' -65 NC_005887.1 + 26709 0.71 0.095436
Target:  5'- cGUCGCgCGGcCGCgGGCAGCUCGaCAu -3'
miRNA:   3'- cCAGCGgGCC-GUGgCCGUCGGGC-GUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.