Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28145 | 5' | -65 | NC_005887.1 | + | 32255 | 0.66 | 0.239 |
Target: 5'- uGGcCGCaCUGGCACUGGCucaucgcugagcgccGaCCUGCAGu -3' miRNA: 3'- -CCaGCG-GGCCGUGGCCGu--------------C-GGGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 14784 | 0.68 | 0.158447 |
Target: 5'- cGUCGCCUGcGCgaucGCCGcGCccGGCCCGCc- -3' miRNA: 3'- cCAGCGGGC-CG----UGGC-CG--UCGGGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 5160 | 0.68 | 0.154353 |
Target: 5'- cGUCGUCCaGGUagAUCGaCAGCCCGCAc -3' miRNA: 3'- cCAGCGGG-CCG--UGGCcGUCGGGCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 21606 | 0.74 | 0.058243 |
Target: 5'- cGGUCGCCUGcaGCGucgugaauuucCCGGCAGCCgGCGu -3' miRNA: 3'- -CCAGCGGGC--CGU-----------GGCCGUCGGgCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 11389 | 0.66 | 0.221197 |
Target: 5'- cGGcCGUCgCGGUugCGGC-GCUCGCu- -3' miRNA: 3'- -CCaGCGG-GCCGugGCCGuCGGGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 2420 | 0.66 | 0.215699 |
Target: 5'- cGUCgGCCUGcgaGCGCUGGUcGCCCGcCGGa -3' miRNA: 3'- cCAG-CGGGC---CGUGGCCGuCGGGC-GUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 19573 | 0.67 | 0.205056 |
Target: 5'- aGGUCGCCU-GCGCCGauGCucGCCgGCAu -3' miRNA: 3'- -CCAGCGGGcCGUGGC--CGu-CGGgCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 25096 | 0.67 | 0.199906 |
Target: 5'- gGGUucugCGCuaCCGGCugGCCGGCGGCCgccggCGCGa -3' miRNA: 3'- -CCA----GCG--GGCCG--UGGCCGUCGG-----GCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 9178 | 0.67 | 0.193381 |
Target: 5'- --gCGCUugcgaccagaguaaCGGCGCCGGU-GCCCGCGc -3' miRNA: 3'- ccaGCGG--------------GCCGUGGCCGuCGGGCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 618 | 0.68 | 0.160112 |
Target: 5'- cGGUCuucgcgcuguauccgGCgCGGCGCgCGGCGGCCgaCGCGu -3' miRNA: 3'- -CCAG---------------CGgGCCGUG-GCCGUCGG--GCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 16013 | 0.67 | 0.185129 |
Target: 5'- cGG-CGUgCGGCgcgugGCCGGCgcaucgauuccGGCCCGCGc -3' miRNA: 3'- -CCaGCGgGCCG-----UGGCCG-----------UCGGGCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 16222 | 0.67 | 0.19487 |
Target: 5'- -aUCGCUCGcGCACuCGGCGcGCCgGUGGu -3' miRNA: 3'- ccAGCGGGC-CGUG-GCCGU-CGGgCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 40840 | 0.66 | 0.23255 |
Target: 5'- -cUCGaccgCCGGC-UCGGCGGCgCGCGGc -3' miRNA: 3'- ccAGCg---GGCCGuGGCCGUCGgGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 41359 | 0.68 | 0.175821 |
Target: 5'- -cUUGCCCGGCGgCaGCAGCgCGCc- -3' miRNA: 3'- ccAGCGGGCCGUgGcCGUCGgGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 2772 | 0.66 | 0.226813 |
Target: 5'- cGUCGCgCGGCucgGCCGcuuGCcGCCCGUAc -3' miRNA: 3'- cCAGCGgGCCG---UGGC---CGuCGGGCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 39982 | 0.67 | 0.199906 |
Target: 5'- --gCGCCCGGCucgauCUGcGCGGCaCCGUAu -3' miRNA: 3'- ccaGCGGGCCGu----GGC-CGUCG-GGCGUc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 18093 | 0.68 | 0.166932 |
Target: 5'- cGUCaGUCCGGCGCgCGuaAGCgCGCGGc -3' miRNA: 3'- cCAG-CGGGCCGUG-GCcgUCGgGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 26791 | 0.68 | 0.154353 |
Target: 5'- cGUgCGCCCGGUcuaugUCGaGCuGCCCGCGGc -3' miRNA: 3'- cCA-GCGGGCCGu----GGC-CGuCGGGCGUC- -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 15699 | 0.66 | 0.226813 |
Target: 5'- cGG-CGCCCugaucGGCGagcCCGGCcGCCUGCu- -3' miRNA: 3'- -CCaGCGGG-----CCGU---GGCCGuCGGGCGuc -5' |
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28145 | 5' | -65 | NC_005887.1 | + | 4692 | 0.66 | 0.210319 |
Target: 5'- -aUCGCgCCGGCggccACCGGCG--CCGCGGc -3' miRNA: 3'- ccAGCG-GGCCG----UGGCCGUcgGGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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