miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 5' -65 NC_005887.1 + 618 0.68 0.160112
Target:  5'- cGGUCuucgcgcuguauccgGCgCGGCGCgCGGCGGCCgaCGCGu -3'
miRNA:   3'- -CCAG---------------CGgGCCGUG-GCCGUCGG--GCGUc -5'
28145 5' -65 NC_005887.1 + 1979 0.67 0.185129
Target:  5'- cGcCGCCCGGCuGCCGaaagaacgcGUAGCCCuCGGg -3'
miRNA:   3'- cCaGCGGGCCG-UGGC---------CGUCGGGcGUC- -5'
28145 5' -65 NC_005887.1 + 2325 0.69 0.135287
Target:  5'- aGGUCGCUggcaucuaUGGCGauCCGGCGggcgaccagcGCUCGCAGg -3'
miRNA:   3'- -CCAGCGG--------GCCGU--GGCCGU----------CGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 2420 0.66 0.215699
Target:  5'- cGUCgGCCUGcgaGCGCUGGUcGCCCGcCGGa -3'
miRNA:   3'- cCAG-CGGGC---CGUGGCCGuCGGGC-GUC- -5'
28145 5' -65 NC_005887.1 + 2772 0.66 0.226813
Target:  5'- cGUCGCgCGGCucgGCCGcuuGCcGCCCGUAc -3'
miRNA:   3'- cCAGCGgGCCG---UGGC---CGuCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 3843 0.67 0.206623
Target:  5'- cGGgCGCUucuacguCGGCACCgacgauguguacggcGGCAGCCCgGCAu -3'
miRNA:   3'- -CCaGCGG-------GCCGUGG---------------CCGUCGGG-CGUc -5'
28145 5' -65 NC_005887.1 + 4620 0.74 0.052126
Target:  5'- -cUCGCCgCGGCGCCGGUGGCCgccggCGCGa -3'
miRNA:   3'- ccAGCGG-GCCGUGGCCGUCGG-----GCGUc -5'
28145 5' -65 NC_005887.1 + 4692 0.66 0.210319
Target:  5'- -aUCGCgCCGGCggccACCGGCG--CCGCGGc -3'
miRNA:   3'- ccAGCG-GGCCG----UGGCCGUcgGGCGUC- -5'
28145 5' -65 NC_005887.1 + 5160 0.68 0.154353
Target:  5'- cGUCGUCCaGGUagAUCGaCAGCCCGCAc -3'
miRNA:   3'- cCAGCGGG-CCG--UGGCcGUCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 5486 0.73 0.070657
Target:  5'- uGGUCGCgCCGgucGCugCGGCGccGCCCGCc- -3'
miRNA:   3'- -CCAGCG-GGC---CGugGCCGU--CGGGCGuc -5'
28145 5' -65 NC_005887.1 + 9178 0.67 0.193381
Target:  5'- --gCGCUugcgaccagaguaaCGGCGCCGGU-GCCCGCGc -3'
miRNA:   3'- ccaGCGG--------------GCCGUGGCCGuCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 10789 0.68 0.150354
Target:  5'- uGUCGCCaucgaacagCGGCACCGcGCGGUCCaucGCGu -3'
miRNA:   3'- cCAGCGG---------GCCGUGGC-CGUCGGG---CGUc -5'
28145 5' -65 NC_005887.1 + 11389 0.66 0.221197
Target:  5'- cGGcCGUCgCGGUugCGGC-GCUCGCu- -3'
miRNA:   3'- -CCaGCGG-GCCGugGCCGuCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 11391 0.68 0.158447
Target:  5'- ---aGCCgGaGCGCUGGCGGCCgGCGc -3'
miRNA:   3'- ccagCGGgC-CGUGGCCGUCGGgCGUc -5'
28145 5' -65 NC_005887.1 + 12084 0.67 0.205056
Target:  5'- cGUCGCUCGGUcaggucACCGacguGCuGGCCgCGCAGa -3'
miRNA:   3'- cCAGCGGGCCG------UGGC----CG-UCGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 12271 0.7 0.118409
Target:  5'- cGGcgCGCCCGGCGCgGcgcuguccuucGCGGUCUGCAu -3'
miRNA:   3'- -CCa-GCGGGCCGUGgC-----------CGUCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 13313 0.67 0.189945
Target:  5'- aGG-CGUUCGGCaacGCCGGCcGCaUCGCGGa -3'
miRNA:   3'- -CCaGCGGGCCG---UGGCCGuCG-GGCGUC- -5'
28145 5' -65 NC_005887.1 + 13511 0.72 0.083289
Target:  5'- aGGUCG-CCGGCACgGGCAuGCgCGCc- -3'
miRNA:   3'- -CCAGCgGGCCGUGgCCGU-CGgGCGuc -5'
28145 5' -65 NC_005887.1 + 13621 0.66 0.226813
Target:  5'- ---aGCgCGGCGCgCGGCGG-CCGCAc -3'
miRNA:   3'- ccagCGgGCCGUG-GCCGUCgGGCGUc -5'
28145 5' -65 NC_005887.1 + 14721 0.7 0.112224
Target:  5'- cGUCGaaCCGGCgACgGGCAGCaCCGCGc -3'
miRNA:   3'- cCAGCg-GGCCG-UGgCCGUCG-GGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.