miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 5' -65 NC_005887.1 + 14784 0.68 0.158447
Target:  5'- cGUCGCCUGcGCgaucGCCGcGCccGGCCCGCc- -3'
miRNA:   3'- cCAGCGGGC-CG----UGGC-CG--UCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 15699 0.66 0.226813
Target:  5'- cGG-CGCCCugaucGGCGagcCCGGCcGCCUGCu- -3'
miRNA:   3'- -CCaGCGGG-----CCGU---GGCCGuCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 15857 0.68 0.16264
Target:  5'- aGGgaaaCGCCCGcgcgcagcaggcGCACCaGCAGCUCGguGc -3'
miRNA:   3'- -CCa---GCGGGC------------CGUGGcCGUCGGGCguC- -5'
28145 5' -65 NC_005887.1 + 16013 0.67 0.185129
Target:  5'- cGG-CGUgCGGCgcgugGCCGGCgcaucgauuccGGCCCGCGc -3'
miRNA:   3'- -CCaGCGgGCCG-----UGGCCG-----------UCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 16222 0.67 0.19487
Target:  5'- -aUCGCUCGcGCACuCGGCGcGCCgGUGGu -3'
miRNA:   3'- ccAGCGGGC-CGUG-GCCGU-CGGgCGUC- -5'
28145 5' -65 NC_005887.1 + 16592 0.72 0.076725
Target:  5'- --gCGCCCacucGGCGCCGGCGGCgaCGCGa -3'
miRNA:   3'- ccaGCGGG----CCGUGGCCGUCGg-GCGUc -5'
28145 5' -65 NC_005887.1 + 18040 0.71 0.100749
Target:  5'- aGUCgGUgCGGCcgauGCCGGCgAGCCCGCGc -3'
miRNA:   3'- cCAG-CGgGCCG----UGGCCG-UCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 18093 0.68 0.166932
Target:  5'- cGUCaGUCCGGCGCgCGuaAGCgCGCGGc -3'
miRNA:   3'- cCAG-CGGGCCGUG-GCcgUCGgGCGUC- -5'
28145 5' -65 NC_005887.1 + 18215 0.69 0.14645
Target:  5'- ---aGCuUCGGCACgacguCGGCGGCCCGCGc -3'
miRNA:   3'- ccagCG-GGCCGUG-----GCCGUCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 18617 0.78 0.028168
Target:  5'- cGUUGCUCGGCAgcgcgaUCGGCGGCCCGCu- -3'
miRNA:   3'- cCAGCGGGCCGU------GGCCGUCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 18898 1.08 0.0001
Target:  5'- uGGUCGCCCGGCACCGGCAGCCCGCAGc -3'
miRNA:   3'- -CCAGCGGGCCGUGGCCGUCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 19573 0.67 0.205056
Target:  5'- aGGUCGCCU-GCGCCGauGCucGCCgGCAu -3'
miRNA:   3'- -CCAGCGGGcCGUGGC--CGu-CGGgCGUc -5'
28145 5' -65 NC_005887.1 + 21606 0.74 0.058243
Target:  5'- cGGUCGCCUGcaGCGucgugaauuucCCGGCAGCCgGCGu -3'
miRNA:   3'- -CCAGCGGGC--CGU-----------GGCCGUCGGgCGUc -5'
28145 5' -65 NC_005887.1 + 21891 0.71 0.092879
Target:  5'- uGGcCGUuucauUCGGCGcgcCCGGCAGCgCCGCGGa -3'
miRNA:   3'- -CCaGCG-----GGCCGU---GGCCGUCG-GGCGUC- -5'
28145 5' -65 NC_005887.1 + 22184 0.71 0.104634
Target:  5'- aGGUCGUuucguuucuguCCGGCGCggcggucgcauauuaCGGUGGCCCGCuGa -3'
miRNA:   3'- -CCAGCG-----------GGCCGUG---------------GCCGUCGGGCGuC- -5'
28145 5' -65 NC_005887.1 + 23391 0.73 0.066871
Target:  5'- -cUCGCgCUGcCGCUGGCAGCCUGCAGc -3'
miRNA:   3'- ccAGCG-GGCcGUGGCCGUCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 23467 0.7 0.12162
Target:  5'- cGGaaGCCCGGCAgCCGGCGacGCCCu--- -3'
miRNA:   3'- -CCagCGGGCCGU-GGCCGU--CGGGcguc -5'
28145 5' -65 NC_005887.1 + 25014 0.72 0.08796
Target:  5'- -cUCGCgCCGGCggccGCCGGcCAGCCgGUAGc -3'
miRNA:   3'- ccAGCG-GGCCG----UGGCC-GUCGGgCGUC- -5'
28145 5' -65 NC_005887.1 + 25025 0.68 0.150354
Target:  5'- -cUCGCggCCGcGCGCaaGGCGGCCCGCGc -3'
miRNA:   3'- ccAGCG--GGC-CGUGg-CCGUCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 25096 0.67 0.199906
Target:  5'- gGGUucugCGCuaCCGGCugGCCGGCGGCCgccggCGCGa -3'
miRNA:   3'- -CCA----GCG--GGCCG--UGGCCGUCGG-----GCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.