miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 5' -65 NC_005887.1 + 23391 0.73 0.066871
Target:  5'- -cUCGCgCUGcCGCUGGCAGCCUGCAGc -3'
miRNA:   3'- ccAGCG-GGCcGUGGCCGUCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 13511 0.72 0.083289
Target:  5'- aGGUCG-CCGGCACgGGCAuGCgCGCc- -3'
miRNA:   3'- -CCAGCgGGCCGUGgCCGU-CGgGCGuc -5'
28145 5' -65 NC_005887.1 + 25014 0.72 0.08796
Target:  5'- -cUCGCgCCGGCggccGCCGGcCAGCCgGUAGc -3'
miRNA:   3'- ccAGCG-GGCCG----UGGCC-GUCGGgCGUC- -5'
28145 5' -65 NC_005887.1 + 33108 0.71 0.092125
Target:  5'- gGGUCGCCCGGCuugcguuccucGCCGuugcgucgguagaaGCAGCcgaccgugCCGCGGc -3'
miRNA:   3'- -CCAGCGGGCCG-----------UGGC--------------CGUCG--------GGCGUC- -5'
28145 5' -65 NC_005887.1 + 32298 0.7 0.124912
Target:  5'- -aUCGUCgGGCcaGCCGGC-GCgCCGCAGu -3'
miRNA:   3'- ccAGCGGgCCG--UGGCCGuCG-GGCGUC- -5'
28145 5' -65 NC_005887.1 + 23467 0.7 0.12162
Target:  5'- cGGaaGCCCGGCAgCCGGCGacGCCCu--- -3'
miRNA:   3'- -CCagCGGGCCGU-GGCCGU--CGGGcguc -5'
28145 5' -65 NC_005887.1 + 37320 0.7 0.12162
Target:  5'- cGGUCGUcgcagcagcgCCGGCACUGGCAucgGUcgCCGCAu -3'
miRNA:   3'- -CCAGCG----------GGCCGUGGCCGU---CG--GGCGUc -5'
28145 5' -65 NC_005887.1 + 22184 0.71 0.104634
Target:  5'- aGGUCGUuucguuucuguCCGGCGCggcggucgcauauuaCGGUGGCCCGCuGa -3'
miRNA:   3'- -CCAGCG-----------GGCCGUG---------------GCCGUCGGGCGuC- -5'
28145 5' -65 NC_005887.1 + 35571 0.71 0.098059
Target:  5'- cGGcgagCGCCgGGCACaCGGCcuuGGCCuUGCAGa -3'
miRNA:   3'- -CCa---GCGGgCCGUG-GCCG---UCGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 26709 0.71 0.095436
Target:  5'- cGUCGCgCGGcCGCgGGCAGCUCGaCAu -3'
miRNA:   3'- cCAGCGgGCC-GUGgCCGUCGGGC-GUc -5'
28145 5' -65 NC_005887.1 + 39982 0.67 0.199906
Target:  5'- --gCGCCCGGCucgauCUGcGCGGCaCCGUAu -3'
miRNA:   3'- ccaGCGGGCCGu----GGC-CGUCG-GGCGUc -5'
28145 5' -65 NC_005887.1 + 25096 0.67 0.199906
Target:  5'- gGGUucugCGCuaCCGGCugGCCGGCGGCCgccggCGCGa -3'
miRNA:   3'- -CCA----GCG--GGCCG--UGGCCGUCGG-----GCGUc -5'
28145 5' -65 NC_005887.1 + 19573 0.67 0.205056
Target:  5'- aGGUCGCCU-GCGCCGauGCucGCCgGCAu -3'
miRNA:   3'- -CCAGCGGGcCGUGGC--CGu-CGGgCGUc -5'
28145 5' -65 NC_005887.1 + 4692 0.66 0.210319
Target:  5'- -aUCGCgCCGGCggccACCGGCG--CCGCGGc -3'
miRNA:   3'- ccAGCG-GGCCG----UGGCCGUcgGGCGUC- -5'
28145 5' -65 NC_005887.1 + 2420 0.66 0.215699
Target:  5'- cGUCgGCCUGcgaGCGCUGGUcGCCCGcCGGa -3'
miRNA:   3'- cCAG-CGGGC---CGUGGCCGuCGGGC-GUC- -5'
28145 5' -65 NC_005887.1 + 11389 0.66 0.221197
Target:  5'- cGGcCGUCgCGGUugCGGC-GCUCGCu- -3'
miRNA:   3'- -CCaGCGG-GCCGugGCCGuCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 15699 0.66 0.226813
Target:  5'- cGG-CGCCCugaucGGCGagcCCGGCcGCCUGCu- -3'
miRNA:   3'- -CCaGCGGG-----CCGU---GGCCGuCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 2772 0.66 0.226813
Target:  5'- cGUCGCgCGGCucgGCCGcuuGCcGCCCGUAc -3'
miRNA:   3'- cCAGCGgGCCG---UGGC---CGuCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 40840 0.66 0.23255
Target:  5'- -cUCGaccgCCGGC-UCGGCGGCgCGCGGc -3'
miRNA:   3'- ccAGCg---GGCCGuGGCCGUCGgGCGUC- -5'
28145 5' -65 NC_005887.1 + 21606 0.74 0.058243
Target:  5'- cGGUCGCCUGcaGCGucgugaauuucCCGGCAGCCgGCGu -3'
miRNA:   3'- -CCAGCGGGC--CGU-----------GGCCGUCGGgCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.