miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 5' -65 NC_005887.1 + 41431 0.7 0.112224
Target:  5'- cGGUCuGCUCGaacGCuucCCGGCGGCgCGCGGa -3'
miRNA:   3'- -CCAG-CGGGC---CGu--GGCCGUCGgGCGUC- -5'
28145 5' -65 NC_005887.1 + 41359 0.68 0.175821
Target:  5'- -cUUGCCCGGCGgCaGCAGCgCGCc- -3'
miRNA:   3'- ccAGCGGGCCGUgGcCGUCGgGCGuc -5'
28145 5' -65 NC_005887.1 + 40840 0.66 0.23255
Target:  5'- -cUCGaccgCCGGC-UCGGCGGCgCGCGGc -3'
miRNA:   3'- ccAGCg---GGCCGuGGCCGUCGgGCGUC- -5'
28145 5' -65 NC_005887.1 + 39982 0.67 0.199906
Target:  5'- --gCGCCCGGCucgauCUGcGCGGCaCCGUAu -3'
miRNA:   3'- ccaGCGGGCCGu----GGC-CGUCG-GGCGUc -5'
28145 5' -65 NC_005887.1 + 37320 0.7 0.12162
Target:  5'- cGGUCGUcgcagcagcgCCGGCACUGGCAucgGUcgCCGCAu -3'
miRNA:   3'- -CCAGCG----------GGCCGUGGCCGU---CG--GGCGUc -5'
28145 5' -65 NC_005887.1 + 36978 0.68 0.171325
Target:  5'- cGUCGCgCGGgucgagcuCGCCGGCgAGCaCgCGCAGg -3'
miRNA:   3'- cCAGCGgGCC--------GUGGCCG-UCG-G-GCGUC- -5'
28145 5' -65 NC_005887.1 + 36438 0.68 0.158447
Target:  5'- --gCGgCCGGCuucuugcccuUCGGcCAGCCCGCAGc -3'
miRNA:   3'- ccaGCgGGCCGu---------GGCC-GUCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 35571 0.71 0.098059
Target:  5'- cGGcgagCGCCgGGCACaCGGCcuuGGCCuUGCAGa -3'
miRNA:   3'- -CCa---GCGGgCCGUG-GCCG---UCGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 35392 0.71 0.092879
Target:  5'- cGGcCGCCgCGGCGCgCGGCAGUggagcgaUGCAGa -3'
miRNA:   3'- -CCaGCGG-GCCGUG-GCCGUCGg------GCGUC- -5'
28145 5' -65 NC_005887.1 + 35363 0.76 0.038355
Target:  5'- --aCGCCCGGCACCacGCgGGCCUGCAGc -3'
miRNA:   3'- ccaGCGGGCCGUGGc-CG-UCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 34496 0.67 0.196871
Target:  5'- uGUCGCCCGG-ACCGuGguacugcacgcccauCAGgCCGCAGc -3'
miRNA:   3'- cCAGCGGGCCgUGGC-C---------------GUCgGGCGUC- -5'
28145 5' -65 NC_005887.1 + 33108 0.71 0.092125
Target:  5'- gGGUCGCCCGGCuugcguuccucGCCGuugcgucgguagaaGCAGCcgaccgugCCGCGGc -3'
miRNA:   3'- -CCAGCGGGCCG-----------UGGC--------------CGUCG--------GGCGUC- -5'
28145 5' -65 NC_005887.1 + 32745 0.66 0.221197
Target:  5'- cGG-CGCUCGcgugcGCGCCGGCGcgcGCCaUGCAGc -3'
miRNA:   3'- -CCaGCGGGC-----CGUGGCCGU---CGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 32298 0.7 0.124912
Target:  5'- -aUCGUCgGGCcaGCCGGC-GCgCCGCAGu -3'
miRNA:   3'- ccAGCGGgCCG--UGGCCGuCG-GGCGUC- -5'
28145 5' -65 NC_005887.1 + 32255 0.66 0.239
Target:  5'- uGGcCGCaCUGGCACUGGCucaucgcugagcgccGaCCUGCAGu -3'
miRNA:   3'- -CCaGCG-GGCCGUGGCCGu--------------C-GGGCGUC- -5'
28145 5' -65 NC_005887.1 + 31293 0.69 0.131744
Target:  5'- cGUCGagcucgaCCGGCAUCGGC-GCaCCGguGg -3'
miRNA:   3'- cCAGCg------GGCCGUGGCCGuCG-GGCguC- -5'
28145 5' -65 NC_005887.1 + 30943 0.67 0.189945
Target:  5'- --gCGCUCGGCGgugaugUCGGC-GCCCGCGu -3'
miRNA:   3'- ccaGCGGGCCGU------GGCCGuCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 29888 0.7 0.109245
Target:  5'- --aCGCCUcuGGCGCCGcGCAcaCCCGCAGa -3'
miRNA:   3'- ccaGCGGG--CCGUGGC-CGUc-GGGCGUC- -5'
28145 5' -65 NC_005887.1 + 26921 0.73 0.063281
Target:  5'- cGGU-GCCCGGCggcaacggcuACCGGCAgacgcGCCCGCu- -3'
miRNA:   3'- -CCAgCGGGCCG----------UGGCCGU-----CGGGCGuc -5'
28145 5' -65 NC_005887.1 + 26791 0.68 0.154353
Target:  5'- cGUgCGCCCGGUcuaugUCGaGCuGCCCGCGGc -3'
miRNA:   3'- cCA-GCGGGCCGu----GGC-CGuCGGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.