miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 5' -65 NC_005887.1 + 30943 0.67 0.189945
Target:  5'- --gCGCUCGGCGgugaugUCGGC-GCCCGCGu -3'
miRNA:   3'- ccaGCGGGCCGU------GGCCGuCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 13313 0.67 0.189945
Target:  5'- aGG-CGUUCGGCaacGCCGGCcGCaUCGCGGa -3'
miRNA:   3'- -CCaGCGGGCCG---UGGCCGuCG-GGCGUC- -5'
28145 5' -65 NC_005887.1 + 16013 0.67 0.185129
Target:  5'- cGG-CGUgCGGCgcgugGCCGGCgcaucgauuccGGCCCGCGc -3'
miRNA:   3'- -CCaGCGgGCCG-----UGGCCG-----------UCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 1979 0.67 0.185129
Target:  5'- cGcCGCCCGGCuGCCGaaagaacgcGUAGCCCuCGGg -3'
miRNA:   3'- cCaGCGGGCCG-UGGC---------CGUCGGGcGUC- -5'
28145 5' -65 NC_005887.1 + 41359 0.68 0.175821
Target:  5'- -cUUGCCCGGCGgCaGCAGCgCGCc- -3'
miRNA:   3'- ccAGCGGGCCGUgGcCGUCGgGCGuc -5'
28145 5' -65 NC_005887.1 + 36978 0.68 0.171325
Target:  5'- cGUCGCgCGGgucgagcuCGCCGGCgAGCaCgCGCAGg -3'
miRNA:   3'- cCAGCGgGCC--------GUGGCCG-UCG-G-GCGUC- -5'
28145 5' -65 NC_005887.1 + 18093 0.68 0.166932
Target:  5'- cGUCaGUCCGGCGCgCGuaAGCgCGCGGc -3'
miRNA:   3'- cCAG-CGGGCCGUG-GCcgUCGgGCGUC- -5'
28145 5' -65 NC_005887.1 + 15857 0.68 0.16264
Target:  5'- aGGgaaaCGCCCGcgcgcagcaggcGCACCaGCAGCUCGguGc -3'
miRNA:   3'- -CCa---GCGGGC------------CGUGGcCGUCGGGCguC- -5'
28145 5' -65 NC_005887.1 + 618 0.68 0.160112
Target:  5'- cGGUCuucgcgcuguauccgGCgCGGCGCgCGGCGGCCgaCGCGu -3'
miRNA:   3'- -CCAG---------------CGgGCCGUG-GCCGUCGG--GCGUc -5'
28145 5' -65 NC_005887.1 + 36438 0.68 0.158447
Target:  5'- --gCGgCCGGCuucuugcccuUCGGcCAGCCCGCAGc -3'
miRNA:   3'- ccaGCgGGCCGu---------GGCC-GUCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 14784 0.68 0.158447
Target:  5'- cGUCGCCUGcGCgaucGCCGcGCccGGCCCGCc- -3'
miRNA:   3'- cCAGCGGGC-CG----UGGC-CG--UCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 11391 0.68 0.158447
Target:  5'- ---aGCCgGaGCGCUGGCGGCCgGCGc -3'
miRNA:   3'- ccagCGGgC-CGUGGCCGUCGGgCGUc -5'
28145 5' -65 NC_005887.1 + 26791 0.68 0.154353
Target:  5'- cGUgCGCCCGGUcuaugUCGaGCuGCCCGCGGc -3'
miRNA:   3'- cCA-GCGGGCCGu----GGC-CGuCGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 5160 0.68 0.154353
Target:  5'- cGUCGUCCaGGUagAUCGaCAGCCCGCAc -3'
miRNA:   3'- cCAGCGGG-CCG--UGGCcGUCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 10789 0.68 0.150354
Target:  5'- uGUCGCCaucgaacagCGGCACCGcGCGGUCCaucGCGu -3'
miRNA:   3'- cCAGCGG---------GCCGUGGC-CGUCGGG---CGUc -5'
28145 5' -65 NC_005887.1 + 25025 0.68 0.150354
Target:  5'- -cUCGCggCCGcGCGCaaGGCGGCCCGCGc -3'
miRNA:   3'- ccAGCG--GGC-CGUGg-CCGUCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 18215 0.69 0.14645
Target:  5'- ---aGCuUCGGCACgacguCGGCGGCCCGCGc -3'
miRNA:   3'- ccagCG-GGCCGUG-----GCCGUCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 2325 0.69 0.135287
Target:  5'- aGGUCGCUggcaucuaUGGCGauCCGGCGggcgaccagcGCUCGCAGg -3'
miRNA:   3'- -CCAGCGG--------GCCGU--GGCCGU----------CGGGCGUC- -5'
28145 5' -65 NC_005887.1 + 31293 0.69 0.131744
Target:  5'- cGUCGagcucgaCCGGCAUCGGC-GCaCCGguGg -3'
miRNA:   3'- cCAGCg------GGCCGUGGCCGuCG-GGCguC- -5'
28145 5' -65 NC_005887.1 + 32298 0.7 0.124912
Target:  5'- -aUCGUCgGGCcaGCCGGC-GCgCCGCAGu -3'
miRNA:   3'- ccAGCGGgCCG--UGGCCGuCG-GGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.