miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28148 3' -51.3 NC_005887.1 + 21821 0.66 0.841779
Target:  5'- cGCUgcCGGGCGCGCcGAAUgaaACGGCc -3'
miRNA:   3'- uCGA--GCUCGCGUGaCUUGaugUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 40831 0.66 0.841779
Target:  5'- cGGCUCGgcGGCGCGCgGcGCgccaACGGCg -3'
miRNA:   3'- -UCGAGC--UCGCGUGaCuUGaug-UGUUG- -5'
28148 3' -51.3 NC_005887.1 + 3236 0.66 0.840851
Target:  5'- uGUUCGAuucgaccGCGcCGCUcGcGCUGCGCAACu -3'
miRNA:   3'- uCGAGCU-------CGC-GUGA-CuUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 30707 0.66 0.839921
Target:  5'- cGCUCGAGCGuCGCaucaacgauccgGAucugccggacgcGCUGCGCGAg -3'
miRNA:   3'- uCGAGCUCGC-GUGa-----------CU------------UGAUGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 31289 0.66 0.832393
Target:  5'- uGUUCGAucGCGUcguGCUGAAgcACGCGGCg -3'
miRNA:   3'- uCGAGCU--CGCG---UGACUUgaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13373 0.66 0.832393
Target:  5'- cGGCgauggCGcuCGCGCUGAagGCcgGCGCGGCg -3'
miRNA:   3'- -UCGa----GCucGCGUGACU--UGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 12886 0.66 0.832393
Target:  5'- uGC-CGuGCGCgaGCUGAucgGCACGGCg -3'
miRNA:   3'- uCGaGCuCGCG--UGACUugaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 27648 0.66 0.826647
Target:  5'- cGCUCGAcggcGCGCucgcgcuguacuuccGCUGcguGCUGCACAc- -3'
miRNA:   3'- uCGAGCU----CGCG---------------UGACu--UGAUGUGUug -5'
28148 3' -51.3 NC_005887.1 + 13695 0.66 0.826647
Target:  5'- uGCUCGGcugagugcggccgccGCGCGCcGcGCUGCcaGCAGCg -3'
miRNA:   3'- uCGAGCU---------------CGCGUGaCuUGAUG--UGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17172 0.66 0.822769
Target:  5'- aGGCguggGAGCGCGC-GAACgcggccgcACGCGGCa -3'
miRNA:   3'- -UCGag--CUCGCGUGaCUUGa-------UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 40558 0.66 0.821795
Target:  5'- cGCUCGcgcacgaguucucGGCGCGCUcGAGCaagUACAACc -3'
miRNA:   3'- uCGAGC-------------UCGCGUGA-CUUGau-GUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13434 0.66 0.819838
Target:  5'- cAGCgCGAGCGCcaucGCcGGgcucuuuuccuuccACUGCGCGGCg -3'
miRNA:   3'- -UCGaGCUCGCG----UGaCU--------------UGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 11609 0.66 0.81292
Target:  5'- cGCgCGcuGCGCGCcGAGCUGCugauCAGCu -3'
miRNA:   3'- uCGaGCu-CGCGUGaCUUGAUGu---GUUG- -5'
28148 3' -51.3 NC_005887.1 + 1464 0.66 0.81292
Target:  5'- cGCUgcCGAGCGgGCccaugaUGAACgaGCGCGACg -3'
miRNA:   3'- uCGA--GCUCGCgUG------ACUUGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 14696 0.66 0.802857
Target:  5'- gGGCUCGucgcGGCGgGC-GGGCcggGCGCGGCg -3'
miRNA:   3'- -UCGAGC----UCGCgUGaCUUGa--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 33812 0.66 0.802857
Target:  5'- uGCUCGugaaggccGGCGCGCUGAuccuCgcCGCGAUc -3'
miRNA:   3'- uCGAGC--------UCGCGUGACUu---GauGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 23475 0.67 0.792593
Target:  5'- gAGCugaUCGAcGCGCuGCUGcGGCUGC-CAGCg -3'
miRNA:   3'- -UCG---AGCU-CGCG-UGAC-UUGAUGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 1360 0.67 0.792593
Target:  5'- cGCUCGAGCGCuacaucCUGucCcGCGCGucGCg -3'
miRNA:   3'- uCGAGCUCGCGu-----GACuuGaUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 32667 0.67 0.786343
Target:  5'- aAGCUCGugugcgggcugcacGUGCACUGGAacaUGCGCGucACg -3'
miRNA:   3'- -UCGAGCu-------------CGCGUGACUUg--AUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 35656 0.67 0.78214
Target:  5'- gAGCUCGA-CGCugUcGAC-AUACAGCa -3'
miRNA:   3'- -UCGAGCUcGCGugAcUUGaUGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.