Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2815 | 5' | -58.7 | NC_001491.2 | + | 116228 | 0.66 | 0.732694 |
Target: 5'- -cUGCUGGCcCcaccgacucggucccAGCAGCccucaucguccucgCCCGGCGGCg -3' miRNA: 3'- aaACGAUCGcG---------------UCGUCG--------------GGGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 6559 | 0.66 | 0.731698 |
Target: 5'- -cUGCgAGCaCAGCGccGCCCUGGCGc- -3' miRNA: 3'- aaACGaUCGcGUCGU--CGGGGCCGUug -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 65491 | 0.66 | 0.731698 |
Target: 5'- -gUGUUGGCGCcacaggugccAGCcggggaAGCCCCgGGCAGu -3' miRNA: 3'- aaACGAUCGCG----------UCG------UCGGGG-CCGUUg -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 121883 | 0.66 | 0.72169 |
Target: 5'- --aGCguggcGCGCAGCGggaagcucuGCUCgGGCAGCa -3' miRNA: 3'- aaaCGau---CGCGUCGU---------CGGGgCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 64731 | 0.66 | 0.711603 |
Target: 5'- --gGCUGGgGaaaccGCGGCCUCGGCGuggGCa -3' miRNA: 3'- aaaCGAUCgCgu---CGUCGGGGCCGU---UG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 60893 | 0.66 | 0.711603 |
Target: 5'- --cGCUGuucGCGCAcGCAGCgCCCcaaacuGGCGAUg -3' miRNA: 3'- aaaCGAU---CGCGU-CGUCG-GGG------CCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 114946 | 0.66 | 0.701446 |
Target: 5'- -cUGCgccGUGC-GCuGGCCCCGGgAGCg -3' miRNA: 3'- aaACGau-CGCGuCG-UCGGGGCCgUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 138274 | 0.66 | 0.701446 |
Target: 5'- --cGCUgGGUGCgacggggaAGUAGCCCUGGgGACc -3' miRNA: 3'- aaaCGA-UCGCG--------UCGUCGGGGCCgUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 68777 | 0.66 | 0.69123 |
Target: 5'- gUUGCcaaaGUAGCugauGCCCUGGCGGCc -3' miRNA: 3'- aAACGaucgCGUCGu---CGGGGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 115476 | 0.66 | 0.69123 |
Target: 5'- --gGCccGCuGCAGCGGCCCCccGGCccggGACg -3' miRNA: 3'- aaaCGauCG-CGUCGUCGGGG--CCG----UUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 148586 | 0.67 | 0.680962 |
Target: 5'- --gGCc-GCGCGGUGGCUCUGcGCGGCg -3' miRNA: 3'- aaaCGauCGCGUCGUCGGGGC-CGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 138125 | 0.67 | 0.680962 |
Target: 5'- --cGCUGGaguugGCGGCccCCCCGGCcGCg -3' miRNA: 3'- aaaCGAUCg----CGUCGucGGGGCCGuUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 123523 | 0.67 | 0.670654 |
Target: 5'- cUUGCggccgcgGGCGCgcaGGUAcGCCgCGGCGGCu -3' miRNA: 3'- aAACGa------UCGCG---UCGU-CGGgGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 122237 | 0.67 | 0.649949 |
Target: 5'- --gGUUGGCGCuuGCGGCgCUuuuuGGCAGCg -3' miRNA: 3'- aaaCGAUCGCGu-CGUCGgGG----CCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 141874 | 0.67 | 0.649949 |
Target: 5'- --aGCUccGGCGaccccggccCAGCccAGCUCCGGCGACc -3' miRNA: 3'- aaaCGA--UCGC---------GUCG--UCGGGGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 147185 | 0.67 | 0.63957 |
Target: 5'- --aGgUGGCGgucGUAGCCCCGGCGc- -3' miRNA: 3'- aaaCgAUCGCgu-CGUCGGGGCCGUug -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 114291 | 0.67 | 0.63957 |
Target: 5'- --aGCUGGUGguugagcacccCGGCccgAGCCCCGGCGu- -3' miRNA: 3'- aaaCGAUCGC-----------GUCG---UCGGGGCCGUug -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 148969 | 0.67 | 0.63957 |
Target: 5'- -aUGggAGCGCGGCggagGGCCUgGGCcACg -3' miRNA: 3'- aaACgaUCGCGUCG----UCGGGgCCGuUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 91943 | 0.67 | 0.629185 |
Target: 5'- --aGuCUGGgGUGGCAGCCUCagagcgGGCGACa -3' miRNA: 3'- aaaC-GAUCgCGUCGUCGGGG------CCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 101564 | 0.67 | 0.627108 |
Target: 5'- -gUGuCUGGUGUuguGGCAGCCaauauggaaggaCGGCAGCg -3' miRNA: 3'- aaAC-GAUCGCG---UCGUCGGg-----------GCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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