miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 3' -58.2 NC_005887.1 + 23308 1.09 0.000362
Target:  5'- aCAACGCCGCACUGCGGCCCAAUCGGAg -3'
miRNA:   3'- -GUUGCGGCGUGACGCCGGGUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 12058 0.74 0.139689
Target:  5'- aGGCGCCGCGCUGCaGCa-GGUCGGc -3'
miRNA:   3'- gUUGCGGCGUGACGcCGggUUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 1065 0.73 0.164841
Target:  5'- aCAGCGCgCGCACgGCGGCCgGcaauuugcgcguGUCGGc -3'
miRNA:   3'- -GUUGCG-GCGUGaCGCCGGgU------------UAGCCu -5'
28151 3' -58.2 NC_005887.1 + 18037 0.73 0.16941
Target:  5'- -cGCGCCGgACUGaCGGCCgaCGAUUGGGc -3'
miRNA:   3'- guUGCGGCgUGAC-GCCGG--GUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 30216 0.73 0.183306
Target:  5'- -cACGCCGCGucGCGGCCUucgauguucgacaGGUCGGAc -3'
miRNA:   3'- guUGCGGCGUgaCGCCGGG-------------UUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 1493 0.72 0.188835
Target:  5'- gCGGCGCuCGCGCggcGCGGCCguG-CGGAa -3'
miRNA:   3'- -GUUGCG-GCGUGa--CGCCGGguUaGCCU- -5'
28151 3' -58.2 NC_005887.1 + 14223 0.71 0.232987
Target:  5'- gCGGCGCCGCGCUguucggcGCGGCauCCGAUCu-- -3'
miRNA:   3'- -GUUGCGGCGUGA-------CGCCG--GGUUAGccu -5'
28151 3' -58.2 NC_005887.1 + 25020 0.71 0.233598
Target:  5'- ---gGCCGCGCgcaagGCGGCCCGcgCGc- -3'
miRNA:   3'- guugCGGCGUGa----CGCCGGGUuaGCcu -5'
28151 3' -58.2 NC_005887.1 + 12660 0.71 0.233598
Target:  5'- -cACGCCGaGCgucGCGGCCgGGUCGGc -3'
miRNA:   3'- guUGCGGCgUGa--CGCCGGgUUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 15319 0.71 0.246103
Target:  5'- -cGCGCaGCACUGCGGCugCCugcuUCGGGc -3'
miRNA:   3'- guUGCGgCGUGACGCCG--GGuu--AGCCU- -5'
28151 3' -58.2 NC_005887.1 + 15386 0.7 0.252561
Target:  5'- uCGACGCCGCGCUGauCGcGCgCGGgcagCGGAu -3'
miRNA:   3'- -GUUGCGGCGUGAC--GC-CGgGUUa---GCCU- -5'
28151 3' -58.2 NC_005887.1 + 24246 0.7 0.259158
Target:  5'- aCGACGCUGUgg-GCGGCUauCGAUCGGGc -3'
miRNA:   3'- -GUUGCGGCGugaCGCCGG--GUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 31562 0.69 0.301711
Target:  5'- -cGCGCCGCGCgcGCGGCa--AUCGGu -3'
miRNA:   3'- guUGCGGCGUGa-CGCCGgguUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 27663 0.69 0.309306
Target:  5'- gAGCuGCCGCGCgcGCGGCUUGAUCGu- -3'
miRNA:   3'- gUUG-CGGCGUGa-CGCCGGGUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 18086 0.69 0.316266
Target:  5'- cCGGCGCgcguaagCGCGCgGCGGuCCCAuUCGGu -3'
miRNA:   3'- -GUUGCG-------GCGUGaCGCC-GGGUuAGCCu -5'
28151 3' -58.2 NC_005887.1 + 601 0.69 0.317046
Target:  5'- cCGGCGCgGCGCgcgGCGGCCgAcgCGu- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGGgUuaGCcu -5'
28151 3' -58.2 NC_005887.1 + 12207 0.69 0.317046
Target:  5'- aCAGCGCCGCGCcggGCGcGCCgGAUUu-- -3'
miRNA:   3'- -GUUGCGGCGUGa--CGC-CGGgUUAGccu -5'
28151 3' -58.2 NC_005887.1 + 16002 0.69 0.324931
Target:  5'- gCGugGCCgGCGCaucgauucCGGCCCGcgCGGAa -3'
miRNA:   3'- -GUugCGG-CGUGac------GCCGGGUuaGCCU- -5'
28151 3' -58.2 NC_005887.1 + 13619 0.69 0.332961
Target:  5'- gCAGCGCgGCGCgcgGCGGCCgCAcUCa-- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGG-GUuAGccu -5'
28151 3' -58.2 NC_005887.1 + 1542 0.69 0.332961
Target:  5'- gAGCGCCGCACgccgucgGCgucgGGCUCcugcucgcacauGAUCGGAa -3'
miRNA:   3'- gUUGCGGCGUGa------CG----CCGGG------------UUAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.