miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 3' -58.2 NC_005887.1 + 372 0.66 0.470068
Target:  5'- -uACGCgCGCACcGCGGCCUcgcuGAUCa-- -3'
miRNA:   3'- guUGCG-GCGUGaCGCCGGG----UUAGccu -5'
28151 3' -58.2 NC_005887.1 + 601 0.69 0.317046
Target:  5'- cCGGCGCgGCGCgcgGCGGCCgAcgCGu- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGGgUuaGCcu -5'
28151 3' -58.2 NC_005887.1 + 1065 0.73 0.164841
Target:  5'- aCAGCGCgCGCACgGCGGCCgGcaauuugcgcguGUCGGc -3'
miRNA:   3'- -GUUGCG-GCGUGaCGCCGGgU------------UAGCCu -5'
28151 3' -58.2 NC_005887.1 + 1385 0.66 0.460029
Target:  5'- -cGCGUCGCGCUcGUucaucaugGGCCCGcUCGGc -3'
miRNA:   3'- guUGCGGCGUGA-CG--------CCGGGUuAGCCu -5'
28151 3' -58.2 NC_005887.1 + 1493 0.72 0.188835
Target:  5'- gCGGCGCuCGCGCggcGCGGCCguG-CGGAa -3'
miRNA:   3'- -GUUGCG-GCGUGa--CGCCGGguUaGCCU- -5'
28151 3' -58.2 NC_005887.1 + 1542 0.69 0.332961
Target:  5'- gAGCGCCGCACgccgucgGCgucgGGCUCcugcucgcacauGAUCGGAa -3'
miRNA:   3'- gUUGCGGCGUGa------CG----CCGGG------------UUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 3006 0.67 0.4403
Target:  5'- uCAACG-CGC-CUGCGGCCagcgccgCGGGc -3'
miRNA:   3'- -GUUGCgGCGuGACGCCGGguua---GCCU- -5'
28151 3' -58.2 NC_005887.1 + 3169 0.66 0.450105
Target:  5'- aCGACuGCCGCuuuuccuucaUGCGGCCgUggUCGGc -3'
miRNA:   3'- -GUUG-CGGCGug--------ACGCCGG-GuuAGCCu -5'
28151 3' -58.2 NC_005887.1 + 5482 0.67 0.4403
Target:  5'- -cGCGCCGguCGCUGCGGCgCCGcccgcCGGu -3'
miRNA:   3'- guUGCGGC--GUGACGCCG-GGUua---GCCu -5'
28151 3' -58.2 NC_005887.1 + 7126 0.67 0.430618
Target:  5'- gCGGgGCgGCGCUGCGGCgCCGuUCa-- -3'
miRNA:   3'- -GUUgCGgCGUGACGCCG-GGUuAGccu -5'
28151 3' -58.2 NC_005887.1 + 8884 0.67 0.430618
Target:  5'- gCGACGCCGUACgcgcucGCGGaccugacgaCCGAggaCGGAa -3'
miRNA:   3'- -GUUGCGGCGUGa-----CGCCg--------GGUUa--GCCU- -5'
28151 3' -58.2 NC_005887.1 + 11428 0.66 0.480217
Target:  5'- uGACGCCcGCGCUGaucaGGCUCAGUg--- -3'
miRNA:   3'- gUUGCGG-CGUGACg---CCGGGUUAgccu -5'
28151 3' -58.2 NC_005887.1 + 11552 0.66 0.450105
Target:  5'- uCGGCGCgcagCGCGCgGCGGUCgCGgaAUCGGGc -3'
miRNA:   3'- -GUUGCG----GCGUGaCGCCGG-GU--UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 12058 0.74 0.139689
Target:  5'- aGGCGCCGCGCUGCaGCa-GGUCGGc -3'
miRNA:   3'- gUUGCGGCGUGACGcCGggUUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 12207 0.69 0.317046
Target:  5'- aCAGCGCCGCGCcggGCGcGCCgGAUUu-- -3'
miRNA:   3'- -GUUGCGGCGUGa--CGC-CGGgUUAGccu -5'
28151 3' -58.2 NC_005887.1 + 12660 0.71 0.233598
Target:  5'- -cACGCCGaGCgucGCGGCCgGGUCGGc -3'
miRNA:   3'- guUGCGGCgUGa--CGCCGGgUUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 13379 0.67 0.393178
Target:  5'- uGGCGCuCGCGCUGaaGGCCgGcgCGGc -3'
miRNA:   3'- gUUGCG-GCGUGACg-CCGGgUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 13619 0.69 0.332961
Target:  5'- gCAGCGCgGCGCgcgGCGGCCgCAcUCa-- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGG-GUuAGccu -5'
28151 3' -58.2 NC_005887.1 + 14223 0.71 0.232987
Target:  5'- gCGGCGCCGCGCUguucggcGCGGCauCCGAUCu-- -3'
miRNA:   3'- -GUUGCGGCGUGA-------CGCCG--GGUUAGccu -5'
28151 3' -58.2 NC_005887.1 + 15060 0.68 0.366521
Target:  5'- gGGCgGCaCGC-CUGCGGCCUGcgCGGc -3'
miRNA:   3'- gUUG-CG-GCGuGACGCCGGGUuaGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.