Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28151 | 3' | -58.2 | NC_005887.1 | + | 41994 | 0.67 | 0.402339 |
Target: 5'- gCAGCaCgGC-CUGCGGCCCAcGUCGa- -3' miRNA: 3'- -GUUGcGgCGuGACGCCGGGU-UAGCcu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 41571 | 0.68 | 0.378805 |
Target: 5'- cCAGCGCCgagacguuccugucgGCcaGCgGCGGCCCAGgugCGGc -3' miRNA: 3'- -GUUGCGG---------------CG--UGaCGCCGGGUUa--GCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 40743 | 0.65 | 0.497711 |
Target: 5'- -uGCGCgCGCGCcaggugcaggauggUGCGGCCgguGAUCGGc -3' miRNA: 3'- guUGCG-GCGUG--------------ACGCCGGg--UUAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 37497 | 0.66 | 0.487385 |
Target: 5'- aAGCGCCGCGCUccacuccgcaccugGCGuGCaggCAGUCGcGAc -3' miRNA: 3'- gUUGCGGCGUGA--------------CGC-CGg--GUUAGC-CU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 33215 | 0.67 | 0.427738 |
Target: 5'- -cGCGCCGCACUGgcacucggucgcgcCGuGCUCcuUCGGGa -3' miRNA: 3'- guUGCGGCGUGAC--------------GC-CGGGuuAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 31743 | 0.68 | 0.349454 |
Target: 5'- aAACGCUuCGCUGCGcCCCGugugacaagucGUCGGAg -3' miRNA: 3'- gUUGCGGcGUGACGCcGGGU-----------UAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 31562 | 0.69 | 0.301711 |
Target: 5'- -cGCGCCGCGCgcGCGGCa--AUCGGu -3' miRNA: 3'- guUGCGGCGUGa-CGCCGgguUAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 30216 | 0.73 | 0.183306 |
Target: 5'- -cACGCCGCGucGCGGCCUucgauguucgacaGGUCGGAc -3' miRNA: 3'- guUGCGGCGUgaCGCCGGG-------------UUAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 29186 | 0.67 | 0.430618 |
Target: 5'- gCAACGCCGUACgaaaccCGGCUC-GUCGcGAc -3' miRNA: 3'- -GUUGCGGCGUGac----GCCGGGuUAGC-CU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 27663 | 0.69 | 0.309306 |
Target: 5'- gAGCuGCCGCGCgcGCGGCUUGAUCGu- -3' miRNA: 3'- gUUG-CGGCGUGa-CGCCGGGUUAGCcu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 27406 | 0.66 | 0.480217 |
Target: 5'- -cGCGCCGCuGCgcGUGGCgCAGUCGa- -3' miRNA: 3'- guUGCGGCG-UGa-CGCCGgGUUAGCcu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 25724 | 0.67 | 0.430618 |
Target: 5'- uGGCGaCGCGCUGCGGCUgg--CGGu -3' miRNA: 3'- gUUGCgGCGUGACGCCGGguuaGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 25544 | 0.67 | 0.444208 |
Target: 5'- ---aGCCGcCGCUGCGuuguGCCCAagcaacacaaaaugaAUCGGGu -3' miRNA: 3'- guugCGGC-GUGACGC----CGGGU---------------UAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 25134 | 0.67 | 0.421062 |
Target: 5'- cCAGCGCCGCAgCUGCaGGUC--GUCGa- -3' miRNA: 3'- -GUUGCGGCGU-GACG-CCGGguUAGCcu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 25020 | 0.71 | 0.233598 |
Target: 5'- ---gGCCGCGCgcaagGCGGCCCGcgCGc- -3' miRNA: 3'- guugCGGCGUGa----CGCCGGGUuaGCcu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 24888 | 0.66 | 0.474115 |
Target: 5'- cCGAUGCCGCGCgcuCGGUCUucuucgcagcagccgGAUCGGc -3' miRNA: 3'- -GUUGCGGCGUGac-GCCGGG---------------UUAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 24246 | 0.7 | 0.259158 |
Target: 5'- aCGACGCUGUgg-GCGGCUauCGAUCGGGc -3' miRNA: 3'- -GUUGCGGCGugaCGCCGG--GUUAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 23650 | 0.67 | 0.399576 |
Target: 5'- uCAGCGCgucguagucgcguuCGCACUGcCGGCCggCGAUgCGGGc -3' miRNA: 3'- -GUUGCG--------------GCGUGAC-GCCGG--GUUA-GCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 23308 | 1.09 | 0.000362 |
Target: 5'- aCAACGCCGCACUGCGGCCCAAUCGGAg -3' miRNA: 3'- -GUUGCGGCGUGACGCCGGGUUAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 18483 | 0.67 | 0.4403 |
Target: 5'- uCAGCGUCGUGCUGacgaCGGCgCCGcggcguaggccAUCGGGu -3' miRNA: 3'- -GUUGCGGCGUGAC----GCCG-GGU-----------UAGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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