miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 3' -58.2 NC_005887.1 + 16199 0.66 0.449119
Target:  5'- aGAgGCCGCGCUGCgaccggacacgcaGGUCaCGAUCGa- -3'
miRNA:   3'- gUUgCGGCGUGACG-------------CCGG-GUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 13379 0.67 0.393178
Target:  5'- uGGCGCuCGCGCUGaaGGCCgGcgCGGc -3'
miRNA:   3'- gUUGCG-GCGUGACg-CCGGgUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 41994 0.67 0.402339
Target:  5'- gCAGCaCgGC-CUGCGGCCCAcGUCGa- -3'
miRNA:   3'- -GUUGcGgCGuGACGCCGGGU-UAGCcu -5'
28151 3' -58.2 NC_005887.1 + 15615 0.67 0.411635
Target:  5'- gGGCGUCGCGCagcagGCGGCcgggcucgCCGAUCaGGGc -3'
miRNA:   3'- gUUGCGGCGUGa----CGCCG--------GGUUAG-CCU- -5'
28151 3' -58.2 NC_005887.1 + 25134 0.67 0.421062
Target:  5'- cCAGCGCCGCAgCUGCaGGUC--GUCGa- -3'
miRNA:   3'- -GUUGCGGCGU-GACG-CCGGguUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 33215 0.67 0.427738
Target:  5'- -cGCGCCGCACUGgcacucggucgcgcCGuGCUCcuUCGGGa -3'
miRNA:   3'- guUGCGGCGUGAC--------------GC-CGGGuuAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 7126 0.67 0.430618
Target:  5'- gCGGgGCgGCGCUGCGGCgCCGuUCa-- -3'
miRNA:   3'- -GUUgCGgCGUGACGCCG-GGUuAGccu -5'
28151 3' -58.2 NC_005887.1 + 8884 0.67 0.430618
Target:  5'- gCGACGCCGUACgcgcucGCGGaccugacgaCCGAggaCGGAa -3'
miRNA:   3'- -GUUGCGGCGUGa-----CGCCg--------GGUUa--GCCU- -5'
28151 3' -58.2 NC_005887.1 + 3006 0.67 0.4403
Target:  5'- uCAACG-CGC-CUGCGGCCagcgccgCGGGc -3'
miRNA:   3'- -GUUGCgGCGuGACGCCGGguua---GCCU- -5'
28151 3' -58.2 NC_005887.1 + 41571 0.68 0.378805
Target:  5'- cCAGCGCCgagacguuccugucgGCcaGCgGCGGCCCAGgugCGGc -3'
miRNA:   3'- -GUUGCGG---------------CG--UGaCGCCGGGUUa--GCCu -5'
28151 3' -58.2 NC_005887.1 + 31743 0.68 0.349454
Target:  5'- aAACGCUuCGCUGCGcCCCGugugacaagucGUCGGAg -3'
miRNA:   3'- gUUGCGGcGUGACGCcGGGU-----------UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 13619 0.69 0.332961
Target:  5'- gCAGCGCgGCGCgcgGCGGCCgCAcUCa-- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGG-GUuAGccu -5'
28151 3' -58.2 NC_005887.1 + 12058 0.74 0.139689
Target:  5'- aGGCGCCGCGCUGCaGCa-GGUCGGc -3'
miRNA:   3'- gUUGCGGCGUGACGcCGggUUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 18037 0.73 0.16941
Target:  5'- -cGCGCCGgACUGaCGGCCgaCGAUUGGGc -3'
miRNA:   3'- guUGCGGCgUGAC-GCCGG--GUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 30216 0.73 0.183306
Target:  5'- -cACGCCGCGucGCGGCCUucgauguucgacaGGUCGGAc -3'
miRNA:   3'- guUGCGGCGUgaCGCCGGG-------------UUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 1493 0.72 0.188835
Target:  5'- gCGGCGCuCGCGCggcGCGGCCguG-CGGAa -3'
miRNA:   3'- -GUUGCG-GCGUGa--CGCCGGguUaGCCU- -5'
28151 3' -58.2 NC_005887.1 + 14223 0.71 0.232987
Target:  5'- gCGGCGCCGCGCUguucggcGCGGCauCCGAUCu-- -3'
miRNA:   3'- -GUUGCGGCGUGA-------CGCCG--GGUUAGccu -5'
28151 3' -58.2 NC_005887.1 + 15386 0.7 0.252561
Target:  5'- uCGACGCCGCGCUGauCGcGCgCGGgcagCGGAu -3'
miRNA:   3'- -GUUGCGGCGUGAC--GC-CGgGUUa---GCCU- -5'
28151 3' -58.2 NC_005887.1 + 27663 0.69 0.309306
Target:  5'- gAGCuGCCGCGCgcGCGGCUUGAUCGu- -3'
miRNA:   3'- gUUG-CGGCGUGa-CGCCGGGUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 12207 0.69 0.317046
Target:  5'- aCAGCGCCGCGCcggGCGcGCCgGAUUu-- -3'
miRNA:   3'- -GUUGCGGCGUGa--CGC-CGGgUUAGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.