miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 3' -58.2 NC_005887.1 + 27663 0.69 0.309306
Target:  5'- gAGCuGCCGCGCgcGCGGCUUGAUCGu- -3'
miRNA:   3'- gUUG-CGGCGUGa-CGCCGGGUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 12207 0.69 0.317046
Target:  5'- aCAGCGCCGCGCcggGCGcGCCgGAUUu-- -3'
miRNA:   3'- -GUUGCGGCGUGa--CGC-CGGgUUAGccu -5'
28151 3' -58.2 NC_005887.1 + 13619 0.69 0.332961
Target:  5'- gCAGCGCgGCGCgcgGCGGCCgCAcUCa-- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGG-GUuAGccu -5'
28151 3' -58.2 NC_005887.1 + 31743 0.68 0.349454
Target:  5'- aAACGCUuCGCUGCGcCCCGugugacaagucGUCGGAg -3'
miRNA:   3'- gUUGCGGcGUGACGCcGGGU-----------UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 29186 0.67 0.430618
Target:  5'- gCAACGCCGUACgaaaccCGGCUC-GUCGcGAc -3'
miRNA:   3'- -GUUGCGGCGUGac----GCCGGGuUAGC-CU- -5'
28151 3' -58.2 NC_005887.1 + 25724 0.67 0.430618
Target:  5'- uGGCGaCGCGCUGCGGCUgg--CGGu -3'
miRNA:   3'- gUUGCgGCGUGACGCCGGguuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 23650 0.67 0.399576
Target:  5'- uCAGCGCgucguagucgcguuCGCACUGcCGGCCggCGAUgCGGGc -3'
miRNA:   3'- -GUUGCG--------------GCGUGAC-GCCGG--GUUA-GCCU- -5'
28151 3' -58.2 NC_005887.1 + 17025 0.68 0.384153
Target:  5'- --uCGCCGaCAUUGCcGCCCGcgCGGu -3'
miRNA:   3'- guuGCGGC-GUGACGcCGGGUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 15060 0.68 0.366521
Target:  5'- gGGCgGCaCGC-CUGCGGCCUGcgCGGc -3'
miRNA:   3'- gUUG-CG-GCGuGACGCCGGGUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 15664 0.68 0.357916
Target:  5'- gCGACGCCcguGCGCUGCGuCUCAGcuUCGGc -3'
miRNA:   3'- -GUUGCGG---CGUGACGCcGGGUU--AGCCu -5'
28151 3' -58.2 NC_005887.1 + 1542 0.69 0.332961
Target:  5'- gAGCGCCGCACgccgucgGCgucgGGCUCcugcucgcacauGAUCGGAa -3'
miRNA:   3'- gUUGCGGCGUGa------CG----CCGGG------------UUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 18483 0.67 0.4403
Target:  5'- uCAGCGUCGUGCUGacgaCGGCgCCGcggcguaggccAUCGGGu -3'
miRNA:   3'- -GUUGCGGCGUGAC----GCCG-GGU-----------UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 5482 0.67 0.4403
Target:  5'- -cGCGCCGguCGCUGCGGCgCCGcccgcCGGu -3'
miRNA:   3'- guUGCGGC--GUGACGCCG-GGUua---GCCu -5'
28151 3' -58.2 NC_005887.1 + 25544 0.67 0.444208
Target:  5'- ---aGCCGcCGCUGCGuuguGCCCAagcaacacaaaaugaAUCGGGu -3'
miRNA:   3'- guugCGGC-GUGACGC----CGGGU---------------UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 3169 0.66 0.450105
Target:  5'- aCGACuGCCGCuuuuccuucaUGCGGCCgUggUCGGc -3'
miRNA:   3'- -GUUG-CGGCGug--------ACGCCGG-GuuAGCCu -5'
28151 3' -58.2 NC_005887.1 + 372 0.66 0.470068
Target:  5'- -uACGCgCGCACcGCGGCCUcgcuGAUCa-- -3'
miRNA:   3'- guUGCG-GCGUGaCGCCGGG----UUAGccu -5'
28151 3' -58.2 NC_005887.1 + 11428 0.66 0.480217
Target:  5'- uGACGCCcGCGCUGaucaGGCUCAGUg--- -3'
miRNA:   3'- gUUGCGG-CGUGACg---CCGGGUUAgccu -5'
28151 3' -58.2 NC_005887.1 + 27406 0.66 0.480217
Target:  5'- -cGCGCCGCuGCgcGUGGCgCAGUCGa- -3'
miRNA:   3'- guUGCGGCG-UGa-CGCCGgGUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 37497 0.66 0.487385
Target:  5'- aAGCGCCGCGCUccacuccgcaccugGCGuGCaggCAGUCGcGAc -3'
miRNA:   3'- gUUGCGGCGUGA--------------CGC-CGg--GUUAGC-CU- -5'
28151 3' -58.2 NC_005887.1 + 1065 0.73 0.164841
Target:  5'- aCAGCGCgCGCACgGCGGCCgGcaauuugcgcguGUCGGc -3'
miRNA:   3'- -GUUGCG-GCGUGaCGCCGGgU------------UAGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.