miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 3' -58.2 NC_005887.1 + 15319 0.71 0.246103
Target:  5'- -cGCGCaGCACUGCGGCugCCugcuUCGGGc -3'
miRNA:   3'- guUGCGgCGUGACGCCG--GGuu--AGCCU- -5'
28151 3' -58.2 NC_005887.1 + 15386 0.7 0.252561
Target:  5'- uCGACGCCGCGCUGauCGcGCgCGGgcagCGGAu -3'
miRNA:   3'- -GUUGCGGCGUGAC--GC-CGgGUUa---GCCU- -5'
28151 3' -58.2 NC_005887.1 + 15615 0.67 0.411635
Target:  5'- gGGCGUCGCGCagcagGCGGCcgggcucgCCGAUCaGGGc -3'
miRNA:   3'- gUUGCGGCGUGa----CGCCG--------GGUUAG-CCU- -5'
28151 3' -58.2 NC_005887.1 + 15664 0.68 0.357916
Target:  5'- gCGACGCCcguGCGCUGCGuCUCAGcuUCGGc -3'
miRNA:   3'- -GUUGCGG---CGUGACGCcGGGUU--AGCCu -5'
28151 3' -58.2 NC_005887.1 + 16002 0.69 0.324931
Target:  5'- gCGugGCCgGCGCaucgauucCGGCCCGcgCGGAa -3'
miRNA:   3'- -GUugCGG-CGUGac------GCCGGGUuaGCCU- -5'
28151 3' -58.2 NC_005887.1 + 16199 0.66 0.449119
Target:  5'- aGAgGCCGCGCUGCgaccggacacgcaGGUCaCGAUCGa- -3'
miRNA:   3'- gUUgCGGCGUGACG-------------CCGG-GUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 17025 0.68 0.384153
Target:  5'- --uCGCCGaCAUUGCcGCCCGcgCGGu -3'
miRNA:   3'- guuGCGGC-GUGACGcCGGGUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 18037 0.73 0.16941
Target:  5'- -cGCGCCGgACUGaCGGCCgaCGAUUGGGc -3'
miRNA:   3'- guUGCGGCgUGAC-GCCGG--GUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 18086 0.69 0.316266
Target:  5'- cCGGCGCgcguaagCGCGCgGCGGuCCCAuUCGGu -3'
miRNA:   3'- -GUUGCG-------GCGUGaCGCC-GGGUuAGCCu -5'
28151 3' -58.2 NC_005887.1 + 18483 0.67 0.4403
Target:  5'- uCAGCGUCGUGCUGacgaCGGCgCCGcggcguaggccAUCGGGu -3'
miRNA:   3'- -GUUGCGGCGUGAC----GCCG-GGU-----------UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 23308 1.09 0.000362
Target:  5'- aCAACGCCGCACUGCGGCCCAAUCGGAg -3'
miRNA:   3'- -GUUGCGGCGUGACGCCGGGUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 23650 0.67 0.399576
Target:  5'- uCAGCGCgucguagucgcguuCGCACUGcCGGCCggCGAUgCGGGc -3'
miRNA:   3'- -GUUGCG--------------GCGUGAC-GCCGG--GUUA-GCCU- -5'
28151 3' -58.2 NC_005887.1 + 24246 0.7 0.259158
Target:  5'- aCGACGCUGUgg-GCGGCUauCGAUCGGGc -3'
miRNA:   3'- -GUUGCGGCGugaCGCCGG--GUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 24888 0.66 0.474115
Target:  5'- cCGAUGCCGCGCgcuCGGUCUucuucgcagcagccgGAUCGGc -3'
miRNA:   3'- -GUUGCGGCGUGac-GCCGGG---------------UUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 25020 0.71 0.233598
Target:  5'- ---gGCCGCGCgcaagGCGGCCCGcgCGc- -3'
miRNA:   3'- guugCGGCGUGa----CGCCGGGUuaGCcu -5'
28151 3' -58.2 NC_005887.1 + 25134 0.67 0.421062
Target:  5'- cCAGCGCCGCAgCUGCaGGUC--GUCGa- -3'
miRNA:   3'- -GUUGCGGCGU-GACG-CCGGguUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 25544 0.67 0.444208
Target:  5'- ---aGCCGcCGCUGCGuuguGCCCAagcaacacaaaaugaAUCGGGu -3'
miRNA:   3'- guugCGGC-GUGACGC----CGGGU---------------UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 25724 0.67 0.430618
Target:  5'- uGGCGaCGCGCUGCGGCUgg--CGGu -3'
miRNA:   3'- gUUGCgGCGUGACGCCGGguuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 27406 0.66 0.480217
Target:  5'- -cGCGCCGCuGCgcGUGGCgCAGUCGa- -3'
miRNA:   3'- guUGCGGCG-UGa-CGCCGgGUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 27663 0.69 0.309306
Target:  5'- gAGCuGCCGCGCgcGCGGCUUGAUCGu- -3'
miRNA:   3'- gUUG-CGGCGUGa-CGCCGGGUUAGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.