Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28151 | 3' | -58.2 | NC_005887.1 | + | 40743 | 0.65 | 0.497711 |
Target: 5'- -uGCGCgCGCGCcaggugcaggauggUGCGGCCgguGAUCGGc -3' miRNA: 3'- guUGCG-GCGUG--------------ACGCCGGg--UUAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 601 | 0.69 | 0.317046 |
Target: 5'- cCGGCGCgGCGCgcgGCGGCCgAcgCGu- -3' miRNA: 3'- -GUUGCGgCGUGa--CGCCGGgUuaGCcu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 31562 | 0.69 | 0.301711 |
Target: 5'- -cGCGCCGCGCgcGCGGCa--AUCGGu -3' miRNA: 3'- guUGCGGCGUGa-CGCCGgguUAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 1065 | 0.73 | 0.164841 |
Target: 5'- aCAGCGCgCGCACgGCGGCCgGcaauuugcgcguGUCGGc -3' miRNA: 3'- -GUUGCG-GCGUGaCGCCGGgU------------UAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 372 | 0.66 | 0.470068 |
Target: 5'- -uACGCgCGCACcGCGGCCUcgcuGAUCa-- -3' miRNA: 3'- guUGCG-GCGUGaCGCCGGG----UUAGccu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 3169 | 0.66 | 0.450105 |
Target: 5'- aCGACuGCCGCuuuuccuucaUGCGGCCgUggUCGGc -3' miRNA: 3'- -GUUG-CGGCGug--------ACGCCGG-GuuAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 5482 | 0.67 | 0.4403 |
Target: 5'- -cGCGCCGguCGCUGCGGCgCCGcccgcCGGu -3' miRNA: 3'- guUGCGGC--GUGACGCCG-GGUua---GCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 18483 | 0.67 | 0.4403 |
Target: 5'- uCAGCGUCGUGCUGacgaCGGCgCCGcggcguaggccAUCGGGu -3' miRNA: 3'- -GUUGCGGCGUGAC----GCCG-GGU-----------UAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 23650 | 0.67 | 0.399576 |
Target: 5'- uCAGCGCgucguagucgcguuCGCACUGcCGGCCggCGAUgCGGGc -3' miRNA: 3'- -GUUGCG--------------GCGUGAC-GCCGG--GUUA-GCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 16002 | 0.69 | 0.324931 |
Target: 5'- gCGugGCCgGCGCaucgauucCGGCCCGcgCGGAa -3' miRNA: 3'- -GUugCGG-CGUGac------GCCGGGUuaGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 15060 | 0.68 | 0.366521 |
Target: 5'- gGGCgGCaCGC-CUGCGGCCUGcgCGGc -3' miRNA: 3'- gUUG-CG-GCGuGACGCCGGGUuaGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 25724 | 0.67 | 0.430618 |
Target: 5'- uGGCGaCGCGCUGCGGCUgg--CGGu -3' miRNA: 3'- gUUGCgGCGUGACGCCGGguuaGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 37497 | 0.66 | 0.487385 |
Target: 5'- aAGCGCCGCGCUccacuccgcaccugGCGuGCaggCAGUCGcGAc -3' miRNA: 3'- gUUGCGGCGUGA--------------CGC-CGg--GUUAGC-CU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 15664 | 0.68 | 0.357916 |
Target: 5'- gCGACGCCcguGCGCUGCGuCUCAGcuUCGGc -3' miRNA: 3'- -GUUGCGG---CGUGACGCcGGGUU--AGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 27406 | 0.66 | 0.480217 |
Target: 5'- -cGCGCCGCuGCgcGUGGCgCAGUCGa- -3' miRNA: 3'- guUGCGGCG-UGa-CGCCGgGUUAGCcu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 29186 | 0.67 | 0.430618 |
Target: 5'- gCAACGCCGUACgaaaccCGGCUC-GUCGcGAc -3' miRNA: 3'- -GUUGCGGCGUGac----GCCGGGuUAGC-CU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 1542 | 0.69 | 0.332961 |
Target: 5'- gAGCGCCGCACgccgucgGCgucgGGCUCcugcucgcacauGAUCGGAa -3' miRNA: 3'- gUUGCGGCGUGa------CG----CCGGG------------UUAGCCU- -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 18086 | 0.69 | 0.316266 |
Target: 5'- cCGGCGCgcguaagCGCGCgGCGGuCCCAuUCGGu -3' miRNA: 3'- -GUUGCG-------GCGUGaCGCC-GGGUuAGCCu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 11428 | 0.66 | 0.480217 |
Target: 5'- uGACGCCcGCGCUGaucaGGCUCAGUg--- -3' miRNA: 3'- gUUGCGG-CGUGACg---CCGGGUUAgccu -5' |
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28151 | 3' | -58.2 | NC_005887.1 | + | 25544 | 0.67 | 0.444208 |
Target: 5'- ---aGCCGcCGCUGCGuuguGCCCAagcaacacaaaaugaAUCGGGu -3' miRNA: 3'- guugCGGC-GUGACGC----CGGGU---------------UAGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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