miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 41014 0.72 0.495642
Target:  5'- cGUGUGGACAGGCGucuacugGCGC-CgCGCGGUg -3'
miRNA:   3'- cUACGCUUGUUUGU-------UGCGuG-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 27219 0.72 0.496726
Target:  5'- uGAU-CGA--GAACAcggGCGCAUCGCGGCg -3'
miRNA:   3'- -CUAcGCUugUUUGU---UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 40211 0.72 0.496726
Target:  5'- cGcgGCGAGC--GCGGCGCGCaGCGcGCa -3'
miRNA:   3'- -CuaCGCUUGuuUGUUGCGUGgCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 41372 0.72 0.506529
Target:  5'- uGAUGCGGuguuccuugcccgGCGgcAGCAGCGCGcCCGUGcGCa -3'
miRNA:   3'- -CUACGCU-------------UGU--UUGUUGCGU-GGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 18393 0.72 0.507623
Target:  5'- --cGCGAACccGAUGGCcuaCGCCGCGGCg -3'
miRNA:   3'- cuaCGCUUGu-UUGUUGc--GUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30465 0.72 0.51862
Target:  5'- --gGCugGAACAGGCggUGCGCgaCGCGGCc -3'
miRNA:   3'- cuaCG--CUUGUUUGuuGCGUG--GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 15801 0.72 0.51862
Target:  5'- cGAUGCGGcagucacugaccACGAggcgcagguGCAGCGcUugCGCGGCg -3'
miRNA:   3'- -CUACGCU------------UGUU---------UGUUGC-GugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3016 0.72 0.51862
Target:  5'- --gGCGAGgAuggucGCGGCgGUGCCGCGGCg -3'
miRNA:   3'- cuaCGCUUgUu----UGUUG-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 22188 0.72 0.51862
Target:  5'- --cGCGAucaGCGAGCcaauCGCACC-CGGCa -3'
miRNA:   3'- cuaCGCU---UGUUUGuu--GCGUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 33370 0.72 0.52971
Target:  5'- --aGCGGAUguGC-ACGCGCCggcGCGGCa -3'
miRNA:   3'- cuaCGCUUGuuUGuUGCGUGG---CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 33187 0.72 0.52971
Target:  5'- aGcgGcCGGACGAGCccguccagaugAACGCGCCGCacuGGCa -3'
miRNA:   3'- -CuaC-GCUUGUUUG-----------UUGCGUGGCG---CCG- -5'
28151 5' -51.3 NC_005887.1 + 23482 0.72 0.52971
Target:  5'- -cUGCG-ACGAGCugaucGACGCgcuGCUGCGGCu -3'
miRNA:   3'- cuACGCuUGUUUG-----UUGCG---UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14464 0.71 0.540886
Target:  5'- cGUGuCGGACAGgucguACGcgcGCGCGCCgaGCGGCg -3'
miRNA:   3'- cUAC-GCUUGUU-----UGU---UGCGUGG--CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 22952 0.71 0.540886
Target:  5'- --cGCGGACcGAU-ACGCuCUGCGGCa -3'
miRNA:   3'- cuaCGCUUGuUUGuUGCGuGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 27653 0.71 0.540886
Target:  5'- uGUGCGcGCuGAGCugcCGCGCgCGCGGCu -3'
miRNA:   3'- cUACGCuUG-UUUGuu-GCGUG-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 42039 0.71 0.540886
Target:  5'- -cUGCuGAUAGGCgAGCGCGCCGCGcacGCa -3'
miRNA:   3'- cuACGcUUGUUUG-UUGCGUGGCGC---CG- -5'
28151 5' -51.3 NC_005887.1 + 17185 0.71 0.540886
Target:  5'- --cGCGAAC--GCGGC-CGCaCGCGGCa -3'
miRNA:   3'- cuaCGCUUGuuUGUUGcGUG-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 16454 0.71 0.540886
Target:  5'- cGUGCGcGCGGGCAuGCGCucgACCgcGCGGCa -3'
miRNA:   3'- cUACGCuUGUUUGU-UGCG---UGG--CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 15332 0.71 0.55214
Target:  5'- --gGCGGACGcuCGccgcGCaGCACUGCGGCu -3'
miRNA:   3'- cuaCGCUUGUuuGU----UG-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 15075 0.71 0.55214
Target:  5'- --cGCGAGCAucagcucgGGCGGCaCGCCuGCGGCc -3'
miRNA:   3'- cuaCGCUUGU--------UUGUUGcGUGG-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.