miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 35425 0.68 0.167496
Target:  5'- gGCCCGCGUggUGCCgggcgugaagcucguGGCCGGCcGccGCGg -3'
miRNA:   3'- gCGGGCGUA--GCGG---------------CCGGCCGuCa-CGC- -5'
28152 3' -64.5 NC_005887.1 + 427 0.68 0.17192
Target:  5'- cCGCCCGCuGUUGCUgcgcucgaacccucuGGCgCGuGUGGUGCGg -3'
miRNA:   3'- -GCGGGCG-UAGCGG---------------CCG-GC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 30522 0.68 0.174172
Target:  5'- aGCCCGCGUaggcggcCGUCGGCCGagacgccacGCAGcaGCGu -3'
miRNA:   3'- gCGGGCGUA-------GCGGCCGGC---------CGUCa-CGC- -5'
28152 3' -64.5 NC_005887.1 + 40691 0.68 0.174625
Target:  5'- gGCgCGCG-CGCaCGGCUGGCAGgaGCc -3'
miRNA:   3'- gCGgGCGUaGCG-GCCGGCCGUCa-CGc -5'
28152 3' -64.5 NC_005887.1 + 40851 0.68 0.179217
Target:  5'- cCGCCaCGaaccucgacCGCCGGCuCGGCGGcGCGc -3'
miRNA:   3'- -GCGG-GCgua------GCGGCCG-GCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 642 0.68 0.183915
Target:  5'- gGUUCuCAUCGCCcaucuGGCCGGCGGUcuucGCGc -3'
miRNA:   3'- gCGGGcGUAGCGG-----CCGGCCGUCA----CGC- -5'
28152 3' -64.5 NC_005887.1 + 15980 0.68 0.183915
Target:  5'- gGCCCGCGcggaaCGCaGGUCGGcCAGcUGCGc -3'
miRNA:   3'- gCGGGCGUa----GCGgCCGGCC-GUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 983 0.67 0.188722
Target:  5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3'
miRNA:   3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 11466 0.67 0.188722
Target:  5'- uGCCUugGCggCGCCGGCCGcCAGcGCu -3'
miRNA:   3'- gCGGG--CGuaGCGGCCGGCcGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 12659 0.67 0.188722
Target:  5'- aCGCCgaGCGUCGCggccgGGUCGGCGGacaccaUGCGc -3'
miRNA:   3'- -GCGGg-CGUAGCGg----CCGGCCGUC------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 12708 0.67 0.193639
Target:  5'- aCGCgCGCA-CGCUGGUCGcGCAGcagcagaaUGCGc -3'
miRNA:   3'- -GCGgGCGUaGCGGCCGGC-CGUC--------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 23442 0.67 0.193639
Target:  5'- cCGCCCGCcauccCGCCGcuuccaccggaaGcCCGGCAGccgGCGa -3'
miRNA:   3'- -GCGGGCGua---GCGGC------------C-GGCCGUCa--CGC- -5'
28152 3' -64.5 NC_005887.1 + 18109 0.67 0.193639
Target:  5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3'
miRNA:   3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5'
28152 3' -64.5 NC_005887.1 + 8543 0.67 0.193639
Target:  5'- aGCCaCGUGUCGUC-GCCGaGCGGuUGCGc -3'
miRNA:   3'- gCGG-GCGUAGCGGcCGGC-CGUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 25668 0.67 0.198668
Target:  5'- cCGCagCGCGUCGCCaucGUCGGuCAGUGgGu -3'
miRNA:   3'- -GCGg-GCGUAGCGGc--CGGCC-GUCACgC- -5'
28152 3' -64.5 NC_005887.1 + 23111 0.67 0.198668
Target:  5'- gGCCaCGUAcgUGuuGGCUGGCGGUGa- -3'
miRNA:   3'- gCGG-GCGUa-GCggCCGGCCGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 13524 0.67 0.203292
Target:  5'- gCGCCUGCG-CGCCcgucaggaugaacGuGCUGaGCGGUGCGc -3'
miRNA:   3'- -GCGGGCGUaGCGG-------------C-CGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 14975 0.67 0.203811
Target:  5'- aCGCCuaCGCcgCGCaGGCCGcGCAGgccgcagGCGu -3'
miRNA:   3'- -GCGG--GCGuaGCGgCCGGC-CGUCa------CGC- -5'
28152 3' -64.5 NC_005887.1 + 23389 0.67 0.209068
Target:  5'- uGCUCGCGcUGCC-GCUGGCAGccUGCa -3'
miRNA:   3'- gCGGGCGUaGCGGcCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 3390 0.67 0.209068
Target:  5'- gCGCaCGCuguUCGCCGcgcgcuaccGCUGGCAGgGCGg -3'
miRNA:   3'- -GCGgGCGu--AGCGGC---------CGGCCGUCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.