miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 8543 0.67 0.193639
Target:  5'- aGCCaCGUGUCGUC-GCCGaGCGGuUGCGc -3'
miRNA:   3'- gCGG-GCGUAGCGGcCGGC-CGUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 9354 0.69 0.13782
Target:  5'- uGCCCGUaaccugcggcGUCGCCGuGCCGaccGCcGUGCa -3'
miRNA:   3'- gCGGGCG----------UAGCGGC-CGGC---CGuCACGc -5'
28152 3' -64.5 NC_005887.1 + 9817 0.7 0.120584
Target:  5'- gGCCCGCGaacgCGUCGcaGCCGGuCAGcGCGg -3'
miRNA:   3'- gCGGGCGUa---GCGGC--CGGCC-GUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 10909 0.66 0.225547
Target:  5'- aGCCggCGCAgaugaCGUCGGCCGGCc-UGCu -3'
miRNA:   3'- gCGG--GCGUa----GCGGCCGGCCGucACGc -5'
28152 3' -64.5 NC_005887.1 + 11300 0.73 0.07184
Target:  5'- uGCUCGCAgcgGCCGGCuCGGCAGcgaGCGc -3'
miRNA:   3'- gCGGGCGUag-CGGCCG-GCCGUCa--CGC- -5'
28152 3' -64.5 NC_005887.1 + 11372 0.7 0.127224
Target:  5'- gCGCUCGC--UGCCGaGCCGGCcGcUGCGa -3'
miRNA:   3'- -GCGGGCGuaGCGGC-CGGCCGuC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 11466 0.67 0.188722
Target:  5'- uGCCUugGCggCGCCGGCCGcCAGcGCu -3'
miRNA:   3'- gCGGG--CGuaGCGGCCGGCcGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 11706 0.66 0.249217
Target:  5'- gCGUCUGCAacgCGUCGaGCuCGGCAuUGCGc -3'
miRNA:   3'- -GCGGGCGUa--GCGGC-CG-GCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 12340 0.73 0.07803
Target:  5'- gCGUacgUCGC-UCGCCGGCCaGGCGGUGaCGu -3'
miRNA:   3'- -GCG---GGCGuAGCGGCCGG-CCGUCAC-GC- -5'
28152 3' -64.5 NC_005887.1 + 12421 0.66 0.219935
Target:  5'- gGCCUGCcacgucacCGCCuGGCCGGCGa-GCGa -3'
miRNA:   3'- gCGGGCGua------GCGG-CCGGCCGUcaCGC- -5'
28152 3' -64.5 NC_005887.1 + 12659 0.67 0.188722
Target:  5'- aCGCCgaGCGUCGCggccgGGUCGGCGGacaccaUGCGc -3'
miRNA:   3'- -GCGGg-CGUAGCGg----CCGGCCGUC------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 12708 0.67 0.193639
Target:  5'- aCGCgCGCA-CGCUGGUCGcGCAGcagcagaaUGCGc -3'
miRNA:   3'- -GCGgGCGUaGCGGCCGGC-CGUC--------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 13273 0.66 0.219935
Target:  5'- gCGUCaGCAgcgacacaCGUCGGCCGGCGGccUGCu -3'
miRNA:   3'- -GCGGgCGUa-------GCGGCCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 13328 0.69 0.153208
Target:  5'- cCGgCCGCAUCGCgGaucucGCCGcGCAGUGg- -3'
miRNA:   3'- -GCgGGCGUAGCGgC-----CGGC-CGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 13381 0.69 0.13782
Target:  5'- gCGCUCGCGcugaagGCCGGCgCGGCGGacgucgGCGg -3'
miRNA:   3'- -GCGGGCGUag----CGGCCG-GCCGUCa-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 13454 0.74 0.055977
Target:  5'- aCGUCCGCcgCGCCGGCCuuCAGcGCGa -3'
miRNA:   3'- -GCGGGCGuaGCGGCCGGccGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 13524 0.67 0.203292
Target:  5'- gCGCCUGCG-CGCCcgucaggaugaacGuGCUGaGCGGUGCGc -3'
miRNA:   3'- -GCGGGCGUaGCGG-------------C-CGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 13640 0.7 0.127224
Target:  5'- gGCCuccuuCGCGUCGUCGGCCugcucgggcGGCAGcGCa -3'
miRNA:   3'- gCGG-----GCGUAGCGGCCGG---------CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 14088 0.69 0.141529
Target:  5'- gCGCCgGCggCGC--GCCGGCGGUuGCGg -3'
miRNA:   3'- -GCGGgCGuaGCGgcCGGCCGUCA-CGC- -5'
28152 3' -64.5 NC_005887.1 + 14975 0.67 0.203811
Target:  5'- aCGCCuaCGCcgCGCaGGCCGcGCAGgccgcagGCGu -3'
miRNA:   3'- -GCGG--GCGuaGCGgCCGGC-CGUCa------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.