miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 642 0.68 0.183915
Target:  5'- gGUUCuCAUCGCCcaucuGGCCGGCGGUcuucGCGc -3'
miRNA:   3'- gCGGGcGUAGCGG-----CCGGCCGUCA----CGC- -5'
28152 3' -64.5 NC_005887.1 + 12659 0.67 0.188722
Target:  5'- aCGCCgaGCGUCGCggccgGGUCGGCGGacaccaUGCGc -3'
miRNA:   3'- -GCGGg-CGUAGCGg----CCGGCCGUC------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 3267 0.66 0.230701
Target:  5'- gCGCUCGCGgcccuucUCGCUguccgGGCgCGGCAGcUGCc -3'
miRNA:   3'- -GCGGGCGU-------AGCGG-----CCG-GCCGUC-ACGc -5'
28152 3' -64.5 NC_005887.1 + 11706 0.66 0.249217
Target:  5'- gCGUCUGCAacgCGUCGaGCuCGGCAuUGCGc -3'
miRNA:   3'- -GCGGGCGUa--GCGGC-CG-GCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 18195 0.7 0.123863
Target:  5'- gGCCCGCGcuUCGCCGGuuGcGUAcaGCGc -3'
miRNA:   3'- gCGGGCGU--AGCGGCCggC-CGUcaCGC- -5'
28152 3' -64.5 NC_005887.1 + 39611 0.69 0.14078
Target:  5'- aGCCCGUcgCGCgGauugggguacagaGCCGGCgccaguuGGUGCGg -3'
miRNA:   3'- gCGGGCGuaGCGgC-------------CGGCCG-------UCACGC- -5'
28152 3' -64.5 NC_005887.1 + 8543 0.67 0.193639
Target:  5'- aGCCaCGUGUCGUC-GCCGaGCGGuUGCGc -3'
miRNA:   3'- gCGG-GCGUAGCGGcCGGC-CGUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 2779 0.66 0.249217
Target:  5'- aGUCCGuCGUCGCgCGGCuCGGCcgcuUGCc -3'
miRNA:   3'- gCGGGC-GUAGCG-GCCG-GCCGuc--ACGc -5'
28152 3' -64.5 NC_005887.1 + 14088 0.69 0.141529
Target:  5'- gCGCCgGCggCGC--GCCGGCGGUuGCGg -3'
miRNA:   3'- -GCGGgCGuaGCGgcCGGCCGUCA-CGC- -5'
28152 3' -64.5 NC_005887.1 + 29566 0.66 0.249217
Target:  5'- gCGCCCGcCGUCgagGCC-GCCGGCuacgacaucGUGCu -3'
miRNA:   3'- -GCGGGC-GUAG---CGGcCGGCCGu--------CACGc -5'
28152 3' -64.5 NC_005887.1 + 18109 0.67 0.193639
Target:  5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3'
miRNA:   3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5'
28152 3' -64.5 NC_005887.1 + 40851 0.68 0.179217
Target:  5'- cCGCCaCGaaccucgacCGCCGGCuCGGCGGcGCGc -3'
miRNA:   3'- -GCGG-GCgua------GCGGCCG-GCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 37170 0.66 0.219935
Target:  5'- gGCCgCGCgAUCGCCgaGGCUGuGCucgcccgcuucGGUGCGa -3'
miRNA:   3'- gCGG-GCG-UAGCGG--CCGGC-CG-----------UCACGC- -5'
28152 3' -64.5 NC_005887.1 + 5529 0.66 0.225547
Target:  5'- gGCCUGCGUCGUggUGGaugCGGCAGgagugccaGCGg -3'
miRNA:   3'- gCGGGCGUAGCG--GCCg--GCCGUCa-------CGC- -5'
28152 3' -64.5 NC_005887.1 + 26568 0.66 0.243113
Target:  5'- gCGCUCGaggaaAUCGUcgaggaagCGGCCGGCAugcccGUGCu -3'
miRNA:   3'- -GCGGGCg----UAGCG--------GCCGGCCGU-----CACGc -5'
28152 3' -64.5 NC_005887.1 + 28478 0.66 0.243113
Target:  5'- gCGCCUGCGcgCGCuCGGCU-GCGacGUGCGc -3'
miRNA:   3'- -GCGGGCGUa-GCG-GCCGGcCGU--CACGC- -5'
28152 3' -64.5 NC_005887.1 + 21575 0.71 0.099805
Target:  5'- aGCCgGCGUCGuuGcgccgauuGCCGGCGGcgaUGCGa -3'
miRNA:   3'- gCGGgCGUAGCggC--------CGGCCGUC---ACGC- -5'
28152 3' -64.5 NC_005887.1 + 34358 0.7 0.114268
Target:  5'- cCGCCCGCAgucagcCGCaCGGCgaCGGCA-UGCGc -3'
miRNA:   3'- -GCGGGCGUa-----GCG-GCCG--GCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 13640 0.7 0.127224
Target:  5'- gGCCuccuuCGCGUCGUCGGCCugcucgggcGGCAGcGCa -3'
miRNA:   3'- gCGG-----GCGUAGCGGCCGG---------CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 9354 0.69 0.13782
Target:  5'- uGCCCGUaaccugcggcGUCGCCGuGCCGaccGCcGUGCa -3'
miRNA:   3'- gCGGGCG----------UAGCGGC-CGGC---CGuCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.