miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 5' -52.8 NC_005887.1 + 32312 0.66 0.779616
Target:  5'- cGGCGCGCcgcaGugCGUAggaccacacgccgaUgCCGGCGAAGAa -3'
miRNA:   3'- -CUGCGCGa---CugGCAU--------------A-GGCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 41133 0.66 0.772301
Target:  5'- aGCGCGCgGAUCGUGUCCuuCGc--- -3'
miRNA:   3'- cUGCGCGaCUGGCAUAGGcuGCuuuu -5'
28152 5' -52.8 NC_005887.1 + 4372 0.66 0.76172
Target:  5'- --gGCaGCUGGCCGgccUCGGCGAGGAu -3'
miRNA:   3'- cugCG-CGACUGGCauaGGCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 17554 0.66 0.76172
Target:  5'- cGGCGCGUacuggaacuacgUGACCGg--CgCGACGAAc- -3'
miRNA:   3'- -CUGCGCG------------ACUGGCauaG-GCUGCUUuu -5'
28152 5' -52.8 NC_005887.1 + 3719 0.66 0.750995
Target:  5'- cGCGCGCcGACCGcgAUCCG-CGcAAGc -3'
miRNA:   3'- cUGCGCGaCUGGCa-UAGGCuGCuUUU- -5'
28152 5' -52.8 NC_005887.1 + 1014 0.67 0.729163
Target:  5'- cGCGCGCUGuacACCGgcuugaagCgGACGAAGGa -3'
miRNA:   3'- cUGCGCGAC---UGGCaua-----GgCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 18120 0.67 0.718083
Target:  5'- gGACGCGCUGuaCGcaaCCGGCGAAGc -3'
miRNA:   3'- -CUGCGCGACugGCauaGGCUGCUUUu -5'
28152 5' -52.8 NC_005887.1 + 7962 0.67 0.695658
Target:  5'- cGCGCGCUGACgaagaUCGGCGAAAGc -3'
miRNA:   3'- cUGCGCGACUGgcauaGGCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 6420 0.67 0.684339
Target:  5'- --gGCGCUGGCCG-AUCUGAaCGGc-- -3'
miRNA:   3'- cugCGCGACUGGCaUAGGCU-GCUuuu -5'
28152 5' -52.8 NC_005887.1 + 23506 0.67 0.684339
Target:  5'- cGACGUGUUcGGCCGcg-CUGACGAAc- -3'
miRNA:   3'- -CUGCGCGA-CUGGCauaGGCUGCUUuu -5'
28152 5' -52.8 NC_005887.1 + 12103 0.67 0.670685
Target:  5'- cGACGUGCUGGCCGcgcagaagcgCCagGACGAGc- -3'
miRNA:   3'- -CUGCGCGACUGGCaua-------GG--CUGCUUuu -5'
28152 5' -52.8 NC_005887.1 + 13105 0.68 0.661551
Target:  5'- cGGCGaCGCUGGCCGUguggAUCUGcuCGAGc- -3'
miRNA:   3'- -CUGC-GCGACUGGCA----UAGGCu-GCUUuu -5'
28152 5' -52.8 NC_005887.1 + 41408 0.68 0.650106
Target:  5'- cGGCGCGCgGAUCGUAcucaaCCGGCGu--- -3'
miRNA:   3'- -CUGCGCGaCUGGCAUa----GGCUGCuuuu -5'
28152 5' -52.8 NC_005887.1 + 14397 0.68 0.638643
Target:  5'- cGCGCGCguacGACC-UGUCCGACa---- -3'
miRNA:   3'- cUGCGCGa---CUGGcAUAGGCUGcuuuu -5'
28152 5' -52.8 NC_005887.1 + 13557 0.68 0.636349
Target:  5'- cGAUGCGCUG-CCGcccgagcaggCCGACGAc-- -3'
miRNA:   3'- -CUGCGCGACuGGCaua-------GGCUGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 33799 0.68 0.627174
Target:  5'- cGGCGCGCUGAUCcUcgCCG-CGAu-- -3'
miRNA:   3'- -CUGCGCGACUGGcAuaGGCuGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 18035 0.69 0.604261
Target:  5'- cGCGCGCcgGACUGacggCCGACGAu-- -3'
miRNA:   3'- cUGCGCGa-CUGGCaua-GGCUGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 4664 0.69 0.590558
Target:  5'- cGACGCGCaGACCGcugcgcagaCGGCGAGGGu -3'
miRNA:   3'- -CUGCGCGaCUGGCauag-----GCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 27422 0.69 0.581451
Target:  5'- aGCGUGCUGACCGUcuugCCGAgGc--- -3'
miRNA:   3'- cUGCGCGACUGGCAua--GGCUgCuuuu -5'
28152 5' -52.8 NC_005887.1 + 26438 0.69 0.581451
Target:  5'- cGCGCGCUGcaGCCGcgcgagAUCCGACuuGAAg -3'
miRNA:   3'- cUGCGCGAC--UGGCa-----UAGGCUGcuUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.