miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28155 3' -61.2 NC_005887.1 + 24552 1.08 0.000254
Target:  5'- cCUUCGGCCGGGCGCCCAUGAUCGCCGu -3'
miRNA:   3'- -GAAGCCGGCCCGCGGGUACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 16316 0.72 0.130301
Target:  5'- -cUCGGCgacGGUGCCCGUGcgcUCGCCGg -3'
miRNA:   3'- gaAGCCGgc-CCGCGGGUACu--AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 4762 0.72 0.14918
Target:  5'- -aUCGGCugauCGGcGCGCCCAUcaGAcccUCGCCGu -3'
miRNA:   3'- gaAGCCG----GCC-CGCGGGUA--CU---AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 4620 0.71 0.153244
Target:  5'- -cUC-GCCGcGGCGCCgGUGGcCGCCGg -3'
miRNA:   3'- gaAGcCGGC-CCGCGGgUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 7816 0.71 0.170516
Target:  5'- --aCGGCuaCGGGCccaaaaGCCCGUGGUCGCa- -3'
miRNA:   3'- gaaGCCG--GCCCG------CGGGUACUAGCGgc -5'
28155 3' -61.2 NC_005887.1 + 41615 0.7 0.17979
Target:  5'- --gCGGCCGGcGCgGCCCGUGAggaucUGCUGc -3'
miRNA:   3'- gaaGCCGGCC-CG-CGGGUACUa----GCGGC- -5'
28155 3' -61.2 NC_005887.1 + 953 0.7 0.189509
Target:  5'- gCUUCGGCgaaGGCGUgCAgcacgaggUGAUCGCCGa -3'
miRNA:   3'- -GAAGCCGgc-CCGCGgGU--------ACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 15631 0.7 0.199686
Target:  5'- --gCGGCCGGGCucGCCgAUcaGggCGCCGu -3'
miRNA:   3'- gaaGCCGGCCCG--CGGgUA--CuaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 9544 0.7 0.199686
Target:  5'- -gUCGGCCGGGuCGUUCG---UCGCCa -3'
miRNA:   3'- gaAGCCGGCCC-GCGGGUacuAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 15192 0.7 0.204951
Target:  5'- -gUCGGUCGGGU--CCGUGA-CGCCGu -3'
miRNA:   3'- gaAGCCGGCCCGcgGGUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 35207 0.69 0.215843
Target:  5'- --aCGGCCGccCGUCCGUGG-CGCCGg -3'
miRNA:   3'- gaaGCCGGCccGCGGGUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 27208 0.69 0.221472
Target:  5'- --gUGGCCGuucGGC-CgCGUGAUCGCCGa -3'
miRNA:   3'- gaaGCCGGC---CCGcGgGUACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 7336 0.69 0.221472
Target:  5'- --gCGGCCGGG-GCCgAUGucgcgGUCGCUGc -3'
miRNA:   3'- gaaGCCGGCCCgCGGgUAC-----UAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 2419 0.69 0.221472
Target:  5'- -gUCGGCCugcgagcgcuGGuCGCCCGccgGAUCGCCa -3'
miRNA:   3'- gaAGCCGG----------CCcGCGGGUa--CUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 12213 0.69 0.227226
Target:  5'- --cCGcGCCGGGCGCgCcgGAUuucaCGCCa -3'
miRNA:   3'- gaaGC-CGGCCCGCGgGuaCUA----GCGGc -5'
28155 3' -61.2 NC_005887.1 + 8521 0.69 0.229563
Target:  5'- -gUUGcGCCGGGCGCUCGaucgcguugacgcgGAUCGCuCGg -3'
miRNA:   3'- gaAGC-CGGCCCGCGGGUa-------------CUAGCG-GC- -5'
28155 3' -61.2 NC_005887.1 + 13306 0.68 0.24525
Target:  5'- -aUCGGCCaGGCGUUCGgcaaCGCCGg -3'
miRNA:   3'- gaAGCCGGcCCGCGGGUacuaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 39390 0.68 0.24525
Target:  5'- ---aGGCCGgcGGCGCaaCCGUGGUCGCg- -3'
miRNA:   3'- gaagCCGGC--CCGCG--GGUACUAGCGgc -5'
28155 3' -61.2 NC_005887.1 + 15719 0.68 0.24525
Target:  5'- -cUCGGCgCGcaucugcgacacGGCGCCC-UGAUCGgCGa -3'
miRNA:   3'- gaAGCCG-GC------------CCGCGGGuACUAGCgGC- -5'
28155 3' -61.2 NC_005887.1 + 24933 0.68 0.255981
Target:  5'- -aUCGGCCGc-CGCCUGgacggugaaugaccUGAUCGCCGa -3'
miRNA:   3'- gaAGCCGGCccGCGGGU--------------ACUAGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.