miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28155 3' -61.2 NC_005887.1 + 841 0.66 0.326967
Target:  5'- --gCGGCCGcgaagaaagccaaGGUGCCCGUGGacgcguggcccgCGCCGc -3'
miRNA:   3'- gaaGCCGGC-------------CCGCGGGUACUa-----------GCGGC- -5'
28155 3' -61.2 NC_005887.1 + 953 0.7 0.189509
Target:  5'- gCUUCGGCgaaGGCGUgCAgcacgaggUGAUCGCCGa -3'
miRNA:   3'- -GAAGCCGgc-CCGCGgGU--------ACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 2023 0.68 0.271108
Target:  5'- -cUCGGCCgccGGGUucacGaCCCAccGAUCGCCGu -3'
miRNA:   3'- gaAGCCGG---CCCG----C-GGGUa-CUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 2419 0.69 0.221472
Target:  5'- -gUCGGCCugcgagcgcuGGuCGCCCGccgGAUCGCCa -3'
miRNA:   3'- gaAGCCGG----------CCcGCGGGUa--CUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 2955 0.66 0.361693
Target:  5'- --gCGGCCGacGUGUCCGUcGUCGCCu -3'
miRNA:   3'- gaaGCCGGCc-CGCGGGUAcUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 3471 0.66 0.370128
Target:  5'- gUUCgGGCCuGGcGCGCUgAUGAUCGagcaCGa -3'
miRNA:   3'- gAAG-CCGG-CC-CGCGGgUACUAGCg---GC- -5'
28155 3' -61.2 NC_005887.1 + 4620 0.71 0.153244
Target:  5'- -cUC-GCCGcGGCGCCgGUGGcCGCCGg -3'
miRNA:   3'- gaAGcCGGC-CCGCGGgUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 4762 0.72 0.14918
Target:  5'- -aUCGGCugauCGGcGCGCCCAUcaGAcccUCGCCGu -3'
miRNA:   3'- gaAGCCG----GCC-CGCGGGUA--CU---AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 6591 0.66 0.370128
Target:  5'- aUUCGGCgGgGGCGaugCCGUcAUUGCCGu -3'
miRNA:   3'- gAAGCCGgC-CCGCg--GGUAcUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 7280 0.68 0.257914
Target:  5'- -aUCGGCCccGGcCGCCCGcugugGGUCGUCGu -3'
miRNA:   3'- gaAGCCGGc-CC-GCGGGUa----CUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 7336 0.69 0.221472
Target:  5'- --gCGGCCGGG-GCCgAUGucgcgGUCGCUGc -3'
miRNA:   3'- gaaGCCGGCCCgCGGgUAC-----UAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 7816 0.71 0.170516
Target:  5'- --aCGGCuaCGGGCccaaaaGCCCGUGGUCGCa- -3'
miRNA:   3'- gaaGCCG--GCCCG------CGGGUACUAGCGgc -5'
28155 3' -61.2 NC_005887.1 + 8521 0.69 0.229563
Target:  5'- -gUUGcGCCGGGCGCUCGaucgcguugacgcgGAUCGCuCGg -3'
miRNA:   3'- gaAGC-CGGCCCGCGGGUa-------------CUAGCG-GC- -5'
28155 3' -61.2 NC_005887.1 + 8616 0.66 0.353393
Target:  5'- cCUUCGGCau-GCGCCCuccuaacugcggAUGAUCGgCGu -3'
miRNA:   3'- -GAAGCCGgccCGCGGG------------UACUAGCgGC- -5'
28155 3' -61.2 NC_005887.1 + 8862 0.68 0.271108
Target:  5'- ----cGCCGGcGCGCCCGUcgaGAUCGCg- -3'
miRNA:   3'- gaagcCGGCC-CGCGGGUA---CUAGCGgc -5'
28155 3' -61.2 NC_005887.1 + 9544 0.7 0.199686
Target:  5'- -gUCGGCCGGGuCGUUCG---UCGCCa -3'
miRNA:   3'- gaAGCCGGCCC-GCGGGUacuAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 12213 0.69 0.227226
Target:  5'- --cCGcGCCGGGCGCgCcgGAUuucaCGCCa -3'
miRNA:   3'- gaaGC-CGGCCCGCGgGuaCUA----GCGGc -5'
28155 3' -61.2 NC_005887.1 + 13306 0.68 0.24525
Target:  5'- -aUCGGCCaGGCGUUCGgcaaCGCCGg -3'
miRNA:   3'- gaAGCCGGcCCGCGGGUacuaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 14649 0.66 0.361693
Target:  5'- --cCGGCgCGGuGCuGCCC---GUCGCCGg -3'
miRNA:   3'- gaaGCCG-GCC-CG-CGGGuacUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 14714 0.66 0.345228
Target:  5'- ---gGGCCGGGCGCggc-GAUCGCg- -3'
miRNA:   3'- gaagCCGGCCCGCGgguaCUAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.