miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28155 3' -61.2 NC_005887.1 + 15192 0.7 0.204951
Target:  5'- -gUCGGUCGGGU--CCGUGA-CGCCGu -3'
miRNA:   3'- gaAGCCGGCCCGcgGGUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 15558 0.66 0.361693
Target:  5'- -cUCGGCgCGcgcgaccGCGCUCGauucgcUGAUCGCCGa -3'
miRNA:   3'- gaAGCCG-GCc------CGCGGGU------ACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 15631 0.7 0.199686
Target:  5'- --gCGGCCGGGCucGCCgAUcaGggCGCCGu -3'
miRNA:   3'- gaaGCCGGCCCG--CGGgUA--CuaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 15719 0.68 0.24525
Target:  5'- -cUCGGCgCGcaucugcgacacGGCGCCC-UGAUCGgCGa -3'
miRNA:   3'- gaAGCCG-GC------------CCGCGGGuACUAGCgGC- -5'
28155 3' -61.2 NC_005887.1 + 16316 0.72 0.130301
Target:  5'- -cUCGGCgacGGUGCCCGUGcgcUCGCCGg -3'
miRNA:   3'- gaAGCCGgc-CCGCGGGUACu--AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 18214 0.67 0.306457
Target:  5'- gCUUCGGCaCGacgucGGCgGCCCGcgcuUCGCCGg -3'
miRNA:   3'- -GAAGCCG-GC-----CCG-CGGGUacu-AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 22677 0.67 0.304239
Target:  5'- -aUCGGCCgguGGGCGCaaccguguugcguuCCucgacacGAUCGCCGu -3'
miRNA:   3'- gaAGCCGG---CCCGCG--------------GGua-----CUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 23349 0.66 0.378696
Target:  5'- uCUUCGGCgCGGGCugcggcaaccGCCaCGagcugcgccuuuUGcgCGCCGa -3'
miRNA:   3'- -GAAGCCG-GCCCG----------CGG-GU------------ACuaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 24552 1.08 0.000254
Target:  5'- cCUUCGGCCGGGCGCCCAUGAUCGCCGu -3'
miRNA:   3'- -GAAGCCGGCCCGCGGGUACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 24933 0.68 0.255981
Target:  5'- -aUCGGCCGc-CGCCUGgacggugaaugaccUGAUCGCCGa -3'
miRNA:   3'- gaAGCCGGCccGCGGGU--------------ACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 27208 0.69 0.221472
Target:  5'- --gUGGCCGuucGGC-CgCGUGAUCGCCGa -3'
miRNA:   3'- gaaGCCGGC---CCGcGgGUACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 32757 0.68 0.271108
Target:  5'- --gCGcGCCGGcGCGCgCCAUGca-GCCGg -3'
miRNA:   3'- gaaGC-CGGCC-CGCG-GGUACuagCGGC- -5'
28155 3' -61.2 NC_005887.1 + 32877 0.66 0.345228
Target:  5'- -gUCGGCCcgcuguucGUGCCCGUGAagcggcgcgCGCCGa -3'
miRNA:   3'- gaAGCCGGcc------CGCGGGUACUa--------GCGGC- -5'
28155 3' -61.2 NC_005887.1 + 33803 0.68 0.277906
Target:  5'- ---aGGCCGGcGCGCUgAUccUCGCCGc -3'
miRNA:   3'- gaagCCGGCC-CGCGGgUAcuAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 35207 0.69 0.215843
Target:  5'- --aCGGCCGccCGUCCGUGG-CGCCGg -3'
miRNA:   3'- gaaGCCGGCccGCGGGUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 35635 0.66 0.353393
Target:  5'- ---aGGCCGuGUGCCCGgcgcUCGCCGc -3'
miRNA:   3'- gaagCCGGCcCGCGGGUacu-AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 38612 0.67 0.313936
Target:  5'- --cCGGCCaGuGGCGCCCGcUGGUguaagCGCCc -3'
miRNA:   3'- gaaGCCGG-C-CCGCGGGU-ACUA-----GCGGc -5'
28155 3' -61.2 NC_005887.1 + 39390 0.68 0.24525
Target:  5'- ---aGGCCGgcGGCGCaaCCGUGGUCGCg- -3'
miRNA:   3'- gaagCCGGC--CCGCG--GGUACUAGCGgc -5'
28155 3' -61.2 NC_005887.1 + 40824 0.68 0.271108
Target:  5'- --gCGGCgCGcGGCGCgCCAacggcGAUCGCCu -3'
miRNA:   3'- gaaGCCG-GC-CCGCG-GGUa----CUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 41615 0.7 0.17979
Target:  5'- --gCGGCCGGcGCgGCCCGUGAggaucUGCUGc -3'
miRNA:   3'- gaaGCCGGCC-CG-CGGGUACUa----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.