miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28155 3' -61.2 NC_005887.1 + 27208 0.69 0.221472
Target:  5'- --gUGGCCGuucGGC-CgCGUGAUCGCCGa -3'
miRNA:   3'- gaaGCCGGC---CCGcGgGUACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 2419 0.69 0.221472
Target:  5'- -gUCGGCCugcgagcgcuGGuCGCCCGccgGAUCGCCa -3'
miRNA:   3'- gaAGCCGG----------CCcGCGGGUa--CUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 7336 0.69 0.221472
Target:  5'- --gCGGCCGGG-GCCgAUGucgcgGUCGCUGc -3'
miRNA:   3'- gaaGCCGGCCCgCGGgUAC-----UAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 35207 0.69 0.215843
Target:  5'- --aCGGCCGccCGUCCGUGG-CGCCGg -3'
miRNA:   3'- gaaGCCGGCccGCGGGUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 15192 0.7 0.204951
Target:  5'- -gUCGGUCGGGU--CCGUGA-CGCCGu -3'
miRNA:   3'- gaAGCCGGCCCGcgGGUACUaGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 9544 0.7 0.199686
Target:  5'- -gUCGGCCGGGuCGUUCG---UCGCCa -3'
miRNA:   3'- gaAGCCGGCCC-GCGGGUacuAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 4762 0.72 0.14918
Target:  5'- -aUCGGCugauCGGcGCGCCCAUcaGAcccUCGCCGu -3'
miRNA:   3'- gaAGCCG----GCC-CGCGGGUA--CU---AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 16316 0.72 0.130301
Target:  5'- -cUCGGCgacGGUGCCCGUGcgcUCGCCGg -3'
miRNA:   3'- gaAGCCGgc-CCGCGGGUACu--AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 24933 0.68 0.255981
Target:  5'- -aUCGGCCGc-CGCCUGgacggugaaugaccUGAUCGCCGa -3'
miRNA:   3'- gaAGCCGGCccGCGGGU--------------ACUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 40824 0.68 0.271108
Target:  5'- --gCGGCgCGcGGCGCgCCAacggcGAUCGCCu -3'
miRNA:   3'- gaaGCCG-GC-CCGCG-GGUa----CUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 2023 0.68 0.271108
Target:  5'- -cUCGGCCgccGGGUucacGaCCCAccGAUCGCCGu -3'
miRNA:   3'- gaAGCCGG---CCCG----C-GGGUa-CUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 6591 0.66 0.370128
Target:  5'- aUUCGGCgGgGGCGaugCCGUcAUUGCCGu -3'
miRNA:   3'- gAAGCCGgC-CCGCg--GGUAcUAGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 2955 0.66 0.361693
Target:  5'- --gCGGCCGacGUGUCCGUcGUCGCCu -3'
miRNA:   3'- gaaGCCGGCc-CGCGGGUAcUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 8616 0.66 0.353393
Target:  5'- cCUUCGGCau-GCGCCCuccuaacugcggAUGAUCGgCGu -3'
miRNA:   3'- -GAAGCCGgccCGCGGG------------UACUAGCgGC- -5'
28155 3' -61.2 NC_005887.1 + 35635 0.66 0.353393
Target:  5'- ---aGGCCGuGUGCCCGgcgcUCGCCGc -3'
miRNA:   3'- gaagCCGGCcCGCGGGUacu-AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 32877 0.66 0.345228
Target:  5'- -gUCGGCCcgcuguucGUGCCCGUGAagcggcgcgCGCCGa -3'
miRNA:   3'- gaAGCCGGcc------CGCGGGUACUa--------GCGGC- -5'
28155 3' -61.2 NC_005887.1 + 38612 0.67 0.313936
Target:  5'- --cCGGCCaGuGGCGCCCGcUGGUguaagCGCCc -3'
miRNA:   3'- gaaGCCGG-C-CCGCGGGU-ACUA-----GCGGc -5'
28155 3' -61.2 NC_005887.1 + 18214 0.67 0.306457
Target:  5'- gCUUCGGCaCGacgucGGCgGCCCGcgcuUCGCCGg -3'
miRNA:   3'- -GAAGCCG-GC-----CCG-CGGGUacu-AGCGGC- -5'
28155 3' -61.2 NC_005887.1 + 41793 0.67 0.284839
Target:  5'- --gCGcGCCGGGaucggaucgcCGCCCGUcAUCGCCu -3'
miRNA:   3'- gaaGC-CGGCCC----------GCGGGUAcUAGCGGc -5'
28155 3' -61.2 NC_005887.1 + 33803 0.68 0.277906
Target:  5'- ---aGGCCGGcGCGCUgAUccUCGCCGc -3'
miRNA:   3'- gaagCCGGCC-CGCGGgUAcuAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.