Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28155 | 3' | -61.2 | NC_005887.1 | + | 24552 | 1.08 | 0.000254 |
Target: 5'- cCUUCGGCCGGGCGCCCAUGAUCGCCGu -3' miRNA: 3'- -GAAGCCGGCCCGCGGGUACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 3471 | 0.66 | 0.370128 |
Target: 5'- gUUCgGGCCuGGcGCGCUgAUGAUCGagcaCGa -3' miRNA: 3'- gAAG-CCGG-CC-CGCGGgUACUAGCg---GC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 15558 | 0.66 | 0.361693 |
Target: 5'- -cUCGGCgCGcgcgaccGCGCUCGauucgcUGAUCGCCGa -3' miRNA: 3'- gaAGCCG-GCc------CGCGGGU------ACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 14649 | 0.66 | 0.361693 |
Target: 5'- --cCGGCgCGGuGCuGCCC---GUCGCCGg -3' miRNA: 3'- gaaGCCG-GCC-CG-CGGGuacUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 14714 | 0.66 | 0.345228 |
Target: 5'- ---gGGCCGGGCGCggc-GAUCGCg- -3' miRNA: 3'- gaagCCGGCCCGCGgguaCUAGCGgc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 841 | 0.66 | 0.326967 |
Target: 5'- --gCGGCCGcgaagaaagccaaGGUGCCCGUGGacgcguggcccgCGCCGc -3' miRNA: 3'- gaaGCCGGC-------------CCGCGGGUACUa-----------GCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 22677 | 0.67 | 0.304239 |
Target: 5'- -aUCGGCCgguGGGCGCaaccguguugcguuCCucgacacGAUCGCCGu -3' miRNA: 3'- gaAGCCGG---CCCGCG--------------GGua-----CUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 8862 | 0.68 | 0.271108 |
Target: 5'- ----cGCCGGcGCGCCCGUcgaGAUCGCg- -3' miRNA: 3'- gaagcCGGCC-CGCGGGUA---CUAGCGgc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 32757 | 0.68 | 0.271108 |
Target: 5'- --gCGcGCCGGcGCGCgCCAUGca-GCCGg -3' miRNA: 3'- gaaGC-CGGCC-CGCG-GGUACuagCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 7280 | 0.68 | 0.257914 |
Target: 5'- -aUCGGCCccGGcCGCCCGcugugGGUCGUCGu -3' miRNA: 3'- gaAGCCGGc-CC-GCGGGUa----CUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 13306 | 0.68 | 0.24525 |
Target: 5'- -aUCGGCCaGGCGUUCGgcaaCGCCGg -3' miRNA: 3'- gaAGCCGGcCCGCGGGUacuaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 4620 | 0.71 | 0.153244 |
Target: 5'- -cUC-GCCGcGGCGCCgGUGGcCGCCGg -3' miRNA: 3'- gaAGcCGGC-CCGCGGgUACUaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 7816 | 0.71 | 0.170516 |
Target: 5'- --aCGGCuaCGGGCccaaaaGCCCGUGGUCGCa- -3' miRNA: 3'- gaaGCCG--GCCCG------CGGGUACUAGCGgc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 41615 | 0.7 | 0.17979 |
Target: 5'- --gCGGCCGGcGCgGCCCGUGAggaucUGCUGc -3' miRNA: 3'- gaaGCCGGCC-CG-CGGGUACUa----GCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 953 | 0.7 | 0.189509 |
Target: 5'- gCUUCGGCgaaGGCGUgCAgcacgaggUGAUCGCCGa -3' miRNA: 3'- -GAAGCCGgc-CCGCGgGU--------ACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 15631 | 0.7 | 0.199686 |
Target: 5'- --gCGGCCGGGCucGCCgAUcaGggCGCCGu -3' miRNA: 3'- gaaGCCGGCCCG--CGGgUA--CuaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 12213 | 0.69 | 0.227226 |
Target: 5'- --cCGcGCCGGGCGCgCcgGAUuucaCGCCa -3' miRNA: 3'- gaaGC-CGGCCCGCGgGuaCUA----GCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 39390 | 0.68 | 0.24525 |
Target: 5'- ---aGGCCGgcGGCGCaaCCGUGGUCGCg- -3' miRNA: 3'- gaagCCGGC--CCGCG--GGUACUAGCGgc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 16316 | 0.72 | 0.130301 |
Target: 5'- -cUCGGCgacGGUGCCCGUGcgcUCGCCGg -3' miRNA: 3'- gaAGCCGgc-CCGCGGGUACu--AGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 6591 | 0.66 | 0.370128 |
Target: 5'- aUUCGGCgGgGGCGaugCCGUcAUUGCCGu -3' miRNA: 3'- gAAGCCGgC-CCGCg--GGUAcUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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