Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28155 | 3' | -61.2 | NC_005887.1 | + | 8616 | 0.66 | 0.353393 |
Target: 5'- cCUUCGGCau-GCGCCCuccuaacugcggAUGAUCGgCGu -3' miRNA: 3'- -GAAGCCGgccCGCGGG------------UACUAGCgGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 7336 | 0.69 | 0.221472 |
Target: 5'- --gCGGCCGGG-GCCgAUGucgcgGUCGCUGc -3' miRNA: 3'- gaaGCCGGCCCgCGGgUAC-----UAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 15192 | 0.7 | 0.204951 |
Target: 5'- -gUCGGUCGGGU--CCGUGA-CGCCGu -3' miRNA: 3'- gaAGCCGGCCCGcgGGUACUaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 16316 | 0.72 | 0.130301 |
Target: 5'- -cUCGGCgacGGUGCCCGUGcgcUCGCCGg -3' miRNA: 3'- gaAGCCGgc-CCGCGGGUACu--AGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 18214 | 0.67 | 0.306457 |
Target: 5'- gCUUCGGCaCGacgucGGCgGCCCGcgcuUCGCCGg -3' miRNA: 3'- -GAAGCCG-GC-----CCG-CGGGUacu-AGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 41793 | 0.67 | 0.284839 |
Target: 5'- --gCGcGCCGGGaucggaucgcCGCCCGUcAUCGCCu -3' miRNA: 3'- gaaGC-CGGCCC----------GCGGGUAcUAGCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 2023 | 0.68 | 0.271108 |
Target: 5'- -cUCGGCCgccGGGUucacGaCCCAccGAUCGCCGu -3' miRNA: 3'- gaAGCCGG---CCCG----C-GGGUa-CUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 23349 | 0.66 | 0.378696 |
Target: 5'- uCUUCGGCgCGGGCugcggcaaccGCCaCGagcugcgccuuuUGcgCGCCGa -3' miRNA: 3'- -GAAGCCG-GCCCG----------CGG-GU------------ACuaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 6591 | 0.66 | 0.370128 |
Target: 5'- aUUCGGCgGgGGCGaugCCGUcAUUGCCGu -3' miRNA: 3'- gAAGCCGgC-CCGCg--GGUAcUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 2419 | 0.69 | 0.221472 |
Target: 5'- -gUCGGCCugcgagcgcuGGuCGCCCGccgGAUCGCCa -3' miRNA: 3'- gaAGCCGG----------CCcGCGGGUa--CUAGCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 15719 | 0.68 | 0.24525 |
Target: 5'- -cUCGGCgCGcaucugcgacacGGCGCCC-UGAUCGgCGa -3' miRNA: 3'- gaAGCCG-GC------------CCGCGGGuACUAGCgGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 24933 | 0.68 | 0.255981 |
Target: 5'- -aUCGGCCGc-CGCCUGgacggugaaugaccUGAUCGCCGa -3' miRNA: 3'- gaAGCCGGCccGCGGGU--------------ACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 35635 | 0.66 | 0.353393 |
Target: 5'- ---aGGCCGuGUGCCCGgcgcUCGCCGc -3' miRNA: 3'- gaagCCGGCcCGCGGGUacu-AGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 8521 | 0.69 | 0.229563 |
Target: 5'- -gUUGcGCCGGGCGCUCGaucgcguugacgcgGAUCGCuCGg -3' miRNA: 3'- gaAGC-CGGCCCGCGGGUa-------------CUAGCG-GC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 32877 | 0.66 | 0.345228 |
Target: 5'- -gUCGGCCcgcuguucGUGCCCGUGAagcggcgcgCGCCGa -3' miRNA: 3'- gaAGCCGGcc------CGCGGGUACUa--------GCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 40824 | 0.68 | 0.271108 |
Target: 5'- --gCGGCgCGcGGCGCgCCAacggcGAUCGCCu -3' miRNA: 3'- gaaGCCG-GC-CCGCG-GGUa----CUAGCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 27208 | 0.69 | 0.221472 |
Target: 5'- --gUGGCCGuucGGC-CgCGUGAUCGCCGa -3' miRNA: 3'- gaaGCCGGC---CCGcGgGUACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 35207 | 0.69 | 0.215843 |
Target: 5'- --aCGGCCGccCGUCCGUGG-CGCCGg -3' miRNA: 3'- gaaGCCGGCccGCGGGUACUaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 38612 | 0.67 | 0.313936 |
Target: 5'- --cCGGCCaGuGGCGCCCGcUGGUguaagCGCCc -3' miRNA: 3'- gaaGCCGG-C-CCGCGGGU-ACUA-----GCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 33803 | 0.68 | 0.277906 |
Target: 5'- ---aGGCCGGcGCGCUgAUccUCGCCGc -3' miRNA: 3'- gaagCCGGCC-CGCGGgUAcuAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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