Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28155 | 3' | -61.2 | NC_005887.1 | + | 7280 | 0.68 | 0.257914 |
Target: 5'- -aUCGGCCccGGcCGCCCGcugugGGUCGUCGu -3' miRNA: 3'- gaAGCCGGc-CC-GCGGGUa----CUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 24933 | 0.68 | 0.255981 |
Target: 5'- -aUCGGCCGc-CGCCUGgacggugaaugaccUGAUCGCCGa -3' miRNA: 3'- gaAGCCGGCccGCGGGU--------------ACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 15719 | 0.68 | 0.24525 |
Target: 5'- -cUCGGCgCGcaucugcgacacGGCGCCC-UGAUCGgCGa -3' miRNA: 3'- gaAGCCG-GC------------CCGCGGGuACUAGCgGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 39390 | 0.68 | 0.24525 |
Target: 5'- ---aGGCCGgcGGCGCaaCCGUGGUCGCg- -3' miRNA: 3'- gaagCCGGC--CCGCG--GGUACUAGCGgc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 13306 | 0.68 | 0.24525 |
Target: 5'- -aUCGGCCaGGCGUUCGgcaaCGCCGg -3' miRNA: 3'- gaAGCCGGcCCGCGGGUacuaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 8521 | 0.69 | 0.229563 |
Target: 5'- -gUUGcGCCGGGCGCUCGaucgcguugacgcgGAUCGCuCGg -3' miRNA: 3'- gaAGC-CGGCCCGCGGGUa-------------CUAGCG-GC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 12213 | 0.69 | 0.227226 |
Target: 5'- --cCGcGCCGGGCGCgCcgGAUuucaCGCCa -3' miRNA: 3'- gaaGC-CGGCCCGCGgGuaCUA----GCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 27208 | 0.69 | 0.221472 |
Target: 5'- --gUGGCCGuucGGC-CgCGUGAUCGCCGa -3' miRNA: 3'- gaaGCCGGC---CCGcGgGUACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 2419 | 0.69 | 0.221472 |
Target: 5'- -gUCGGCCugcgagcgcuGGuCGCCCGccgGAUCGCCa -3' miRNA: 3'- gaAGCCGG----------CCcGCGGGUa--CUAGCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 7336 | 0.69 | 0.221472 |
Target: 5'- --gCGGCCGGG-GCCgAUGucgcgGUCGCUGc -3' miRNA: 3'- gaaGCCGGCCCgCGGgUAC-----UAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 35207 | 0.69 | 0.215843 |
Target: 5'- --aCGGCCGccCGUCCGUGG-CGCCGg -3' miRNA: 3'- gaaGCCGGCccGCGGGUACUaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 15192 | 0.7 | 0.204951 |
Target: 5'- -gUCGGUCGGGU--CCGUGA-CGCCGu -3' miRNA: 3'- gaAGCCGGCCCGcgGGUACUaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 9544 | 0.7 | 0.199686 |
Target: 5'- -gUCGGCCGGGuCGUUCG---UCGCCa -3' miRNA: 3'- gaAGCCGGCCC-GCGGGUacuAGCGGc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 15631 | 0.7 | 0.199686 |
Target: 5'- --gCGGCCGGGCucGCCgAUcaGggCGCCGu -3' miRNA: 3'- gaaGCCGGCCCG--CGGgUA--CuaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 953 | 0.7 | 0.189509 |
Target: 5'- gCUUCGGCgaaGGCGUgCAgcacgaggUGAUCGCCGa -3' miRNA: 3'- -GAAGCCGgc-CCGCGgGU--------ACUAGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 41615 | 0.7 | 0.17979 |
Target: 5'- --gCGGCCGGcGCgGCCCGUGAggaucUGCUGc -3' miRNA: 3'- gaaGCCGGCC-CG-CGGGUACUa----GCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 7816 | 0.71 | 0.170516 |
Target: 5'- --aCGGCuaCGGGCccaaaaGCCCGUGGUCGCa- -3' miRNA: 3'- gaaGCCG--GCCCG------CGGGUACUAGCGgc -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 4620 | 0.71 | 0.153244 |
Target: 5'- -cUC-GCCGcGGCGCCgGUGGcCGCCGg -3' miRNA: 3'- gaAGcCGGC-CCGCGGgUACUaGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 4762 | 0.72 | 0.14918 |
Target: 5'- -aUCGGCugauCGGcGCGCCCAUcaGAcccUCGCCGu -3' miRNA: 3'- gaAGCCG----GCC-CGCGGGUA--CU---AGCGGC- -5' |
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28155 | 3' | -61.2 | NC_005887.1 | + | 16316 | 0.72 | 0.130301 |
Target: 5'- -cUCGGCgacGGUGCCCGUGcgcUCGCCGg -3' miRNA: 3'- gaAGCCGgc-CCGCGGGUACu--AGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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