miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28157 5' -60.5 NC_005887.1 + 24936 0.97 0.002417
Target:  5'- uGUCGAUCGCGACGC-GUGCGCGCGGGc -3'
miRNA:   3'- -CAGCUAGCGCUGCGcCACGCGCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 27327 0.76 0.086831
Target:  5'- -cCGAUCauugGCGACGCGGgccgGCGCGCGa- -3'
miRNA:   3'- caGCUAG----CGCUGCGCCa---CGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 302 0.76 0.09434
Target:  5'- -gUGAUCaGCGAggcCGCGGUGCGCGCGu- -3'
miRNA:   3'- caGCUAG-CGCU---GCGCCACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 992 0.74 0.127445
Target:  5'- cUCGGggcacUCGCGAUGCGGgucGCGaCGCGGa -3'
miRNA:   3'- cAGCU-----AGCGCUGCGCCa--CGC-GCGCCc -5'
28157 5' -60.5 NC_005887.1 + 33731 0.73 0.149766
Target:  5'- cUCGAUCGCGGCGaGGaucaGCGCGCcGGc -3'
miRNA:   3'- cAGCUAGCGCUGCgCCa---CGCGCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 41330 0.72 0.157964
Target:  5'- -aCGGUCGUGACGcCGGUugaguacgauccGCGCGCcgccGGGa -3'
miRNA:   3'- caGCUAGCGCUGC-GCCA------------CGCGCG----CCC- -5'
28157 5' -60.5 NC_005887.1 + 15019 0.72 0.157964
Target:  5'- cGUCGAgUUGCGGCGCGucGUacggcaGCGCGCGGc -3'
miRNA:   3'- -CAGCU-AGCGCUGCGC--CA------CGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 22607 0.72 0.171023
Target:  5'- uGUCGAUCGCGGa-CGGcaUGCGCaGCGGc -3'
miRNA:   3'- -CAGCUAGCGCUgcGCC--ACGCG-CGCCc -5'
28157 5' -60.5 NC_005887.1 + 8874 0.72 0.175586
Target:  5'- cGUCGAgaUCGCGACGCcGUacGCGCucGCGGa -3'
miRNA:   3'- -CAGCU--AGCGCUGCGcCA--CGCG--CGCCc -5'
28157 5' -60.5 NC_005887.1 + 34709 0.72 0.180257
Target:  5'- cGUCG-UCGCGcuUGCGGUGCGCgGCGa- -3'
miRNA:   3'- -CAGCuAGCGCu-GCGCCACGCG-CGCcc -5'
28157 5' -60.5 NC_005887.1 + 12496 0.72 0.180257
Target:  5'- gGUCcAUCGCGAuCGCGc-GCGCGCGGu -3'
miRNA:   3'- -CAGcUAGCGCU-GCGCcaCGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 41009 0.71 0.205294
Target:  5'- gGUCGAgcaugCGCucGGCGUugccgaacucGGUGCGCGCGcGGu -3'
miRNA:   3'- -CAGCUa----GCG--CUGCG----------CCACGCGCGC-CC- -5'
28157 5' -60.5 NC_005887.1 + 15384 0.7 0.216125
Target:  5'- gGUCGA-CGCcGCGCuGaucGCGCGCGGGc -3'
miRNA:   3'- -CAGCUaGCGcUGCGcCa--CGCGCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 11089 0.7 0.221722
Target:  5'- -aCGAUucCGCGugGCgcaucggcuGGUGCGCGCGa- -3'
miRNA:   3'- caGCUA--GCGCugCG---------CCACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 17164 0.7 0.239257
Target:  5'- --aGAUCGCGagGCGUGGgaGCGCGCGa- -3'
miRNA:   3'- cagCUAGCGC--UGCGCCa-CGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 16441 0.69 0.25158
Target:  5'- --gGAUCGaGAacCGC-GUGCGCGCGGGc -3'
miRNA:   3'- cagCUAGCgCU--GCGcCACGCGCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 15634 0.69 0.257936
Target:  5'- -gCGAUCaGCGaaucgaGCGCGGUcGCGCGCGc- -3'
miRNA:   3'- caGCUAG-CGC------UGCGCCA-CGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 41951 0.69 0.257936
Target:  5'- -cCGG-CGUGcucGCGUGGUGCGUGCGcGGc -3'
miRNA:   3'- caGCUaGCGC---UGCGCCACGCGCGC-CC- -5'
28157 5' -60.5 NC_005887.1 + 2245 0.69 0.257936
Target:  5'- aGUCG-UCGCGACGagcauGG-GCGCGCGu- -3'
miRNA:   3'- -CAGCuAGCGCUGCg----CCaCGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 18093 0.69 0.264422
Target:  5'- cGUCaGUC-CGGCGCGcGUaaGCGCGCGGcGg -3'
miRNA:   3'- -CAGcUAGcGCUGCGC-CA--CGCGCGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.