miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28157 5' -60.5 NC_005887.1 + 302 0.76 0.09434
Target:  5'- -gUGAUCaGCGAggcCGCGGUGCGCGCGu- -3'
miRNA:   3'- caGCUAG-CGCU---GCGCCACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 835 0.66 0.404058
Target:  5'- -gCGAUCGCGGcCGCgaagaaagccaaGGUGCcCGUGGa -3'
miRNA:   3'- caGCUAGCGCU-GCG------------CCACGcGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 992 0.74 0.127445
Target:  5'- cUCGGggcacUCGCGAUGCGGgucGCGaCGCGGa -3'
miRNA:   3'- cAGCU-----AGCGCUGCGCCa--CGC-GCGCCc -5'
28157 5' -60.5 NC_005887.1 + 1499 0.67 0.352696
Target:  5'- cUCG--CGCGGCGCGGc-CGUGCGGa -3'
miRNA:   3'- cAGCuaGCGCUGCGCCacGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 2245 0.69 0.257936
Target:  5'- aGUCG-UCGCGACGagcauGG-GCGCGCGu- -3'
miRNA:   3'- -CAGCuAGCGCUGCg----CCaCGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 2517 0.68 0.328804
Target:  5'- cUCG-UCGaCGGCGCcGUaGCGCGCGaGGu -3'
miRNA:   3'- cAGCuAGC-GCUGCGcCA-CGCGCGC-CC- -5'
28157 5' -60.5 NC_005887.1 + 3009 0.68 0.291691
Target:  5'- -aUGGUCGCG--GCGGUGC-CGCGGc -3'
miRNA:   3'- caGCUAGCGCugCGCCACGcGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 3792 0.68 0.30613
Target:  5'- cGUCcagcuugCGCGGauCGCGGUcgGCGCGCGGc -3'
miRNA:   3'- -CAGcua----GCGCU--GCGCCA--CGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 4568 0.66 0.413066
Target:  5'- aGUCGG-CGagcaGACGCGcGaUGCGCGCGc- -3'
miRNA:   3'- -CAGCUaGCg---CUGCGC-C-ACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 4696 0.66 0.422198
Target:  5'- cUUGAUCGCGcCgGCGGccaccgGCGCcGCGGc -3'
miRNA:   3'- cAGCUAGCGCuG-CGCCa-----CGCG-CGCCc -5'
28157 5' -60.5 NC_005887.1 + 6857 0.68 0.321111
Target:  5'- uGUCGGaccUCGCGACGuCGGccaaCGCGCaGGc -3'
miRNA:   3'- -CAGCU---AGCGCUGC-GCCac--GCGCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 8536 0.67 0.37779
Target:  5'- uGUCG-UCGcCGA-GCGGuUGCGC-CGGGc -3'
miRNA:   3'- -CAGCuAGC-GCUgCGCC-ACGCGcGCCC- -5'
28157 5' -60.5 NC_005887.1 + 8874 0.72 0.175586
Target:  5'- cGUCGAgaUCGCGACGCcGUacGCGCucGCGGa -3'
miRNA:   3'- -CAGCU--AGCGCUGCGcCA--CGCG--CGCCc -5'
28157 5' -60.5 NC_005887.1 + 10385 0.68 0.328804
Target:  5'- -aCGAUUGCGGCuCGucauccUGCaGCGCGGGg -3'
miRNA:   3'- caGCUAGCGCUGcGCc-----ACG-CGCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 10704 0.67 0.368451
Target:  5'- cGUCGAaCGCGauggaccGCGCGGUGC-CGCu-- -3'
miRNA:   3'- -CAGCUaGCGC-------UGCGCCACGcGCGccc -5'
28157 5' -60.5 NC_005887.1 + 10736 0.68 0.328804
Target:  5'- uUCGAUgGCGACauggaauCGGacugGCGCgGCGGGu -3'
miRNA:   3'- cAGCUAgCGCUGc------GCCa---CGCG-CGCCC- -5'
28157 5' -60.5 NC_005887.1 + 10993 0.66 0.404058
Target:  5'- cGUCGAggaUGGCGUGGUGCucggGUGCGGcGg -3'
miRNA:   3'- -CAGCUagcGCUGCGCCACG----CGCGCC-C- -5'
28157 5' -60.5 NC_005887.1 + 11089 0.7 0.221722
Target:  5'- -aCGAUucCGCGugGCgcaucggcuGGUGCGCGCGa- -3'
miRNA:   3'- caGCUA--GCGCugCG---------CCACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 11795 0.67 0.336633
Target:  5'- -gCGugcauUCGUGcGCGCcGUGCGCGCGGc -3'
miRNA:   3'- caGCu----AGCGC-UGCGcCACGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 12087 0.68 0.298843
Target:  5'- -aCGGUUGCGA-GCGGcgUGCGUGCGccGGa -3'
miRNA:   3'- caGCUAGCGCUgCGCC--ACGCGCGC--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.