miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28157 5' -60.5 NC_005887.1 + 30476 0.67 0.344597
Target:  5'- -gCGGUgCGCGACGCGGccCGUGCGu- -3'
miRNA:   3'- caGCUA-GCGCUGCGCCacGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 25979 0.69 0.271039
Target:  5'- uUCGAcacuUCgGCGACGCGGUacagcuucacggGCGgCGuCGGGg -3'
miRNA:   3'- cAGCU----AG-CGCUGCGCCA------------CGC-GC-GCCC- -5'
28157 5' -60.5 NC_005887.1 + 14184 0.68 0.30613
Target:  5'- cGUCGAUUGC-ACGCGcUGUcggGCGCGGc -3'
miRNA:   3'- -CAGCUAGCGcUGCGCcACG---CGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 32734 0.68 0.321111
Target:  5'- -gCGGgguagCGCGGCGCucgcGUGCGCGCcGGc -3'
miRNA:   3'- caGCUa----GCGCUGCGc---CACGCGCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 6857 0.68 0.321111
Target:  5'- uGUCGGaccUCGCGACGuCGGccaaCGCGCaGGc -3'
miRNA:   3'- -CAGCU---AGCGCUGC-GCCac--GCGCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 14699 0.68 0.328804
Target:  5'- cUCG-UCGCGGCggGCGGgccGgGCGCGGc -3'
miRNA:   3'- cAGCuAGCGCUG--CGCCa--CgCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 10736 0.68 0.328804
Target:  5'- uUCGAUgGCGACauggaauCGGacugGCGCgGCGGGu -3'
miRNA:   3'- cAGCUAgCGCUGc------GCCa---CGCG-CGCCC- -5'
28157 5' -60.5 NC_005887.1 + 31381 0.68 0.328804
Target:  5'- cUCGA-CGCGcucggcguaGCGGUGCGUgccgugguucaGCGGGg -3'
miRNA:   3'- cAGCUaGCGCug-------CGCCACGCG-----------CGCCC- -5'
28157 5' -60.5 NC_005887.1 + 42014 0.68 0.328804
Target:  5'- cGUCGAgugucgcCGCGGCGCGcGaUGCGUacaagGCGGa -3'
miRNA:   3'- -CAGCUa------GCGCUGCGC-C-ACGCG-----CGCCc -5'
28157 5' -60.5 NC_005887.1 + 41951 0.69 0.257936
Target:  5'- -cCGG-CGUGcucGCGUGGUGCGUGCGcGGc -3'
miRNA:   3'- caGCUaGCGC---UGCGCCACGCGCGC-CC- -5'
28157 5' -60.5 NC_005887.1 + 2245 0.69 0.257936
Target:  5'- aGUCG-UCGCGACGagcauGG-GCGCGCGu- -3'
miRNA:   3'- -CAGCuAGCGCUGCg----CCaCGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 16441 0.69 0.25158
Target:  5'- --gGAUCGaGAacCGC-GUGCGCGCGGGc -3'
miRNA:   3'- cagCUAGCgCU--GCGcCACGCGCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 302 0.76 0.09434
Target:  5'- -gUGAUCaGCGAggcCGCGGUGCGCGCGu- -3'
miRNA:   3'- caGCUAG-CGCU---GCGCCACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 33731 0.73 0.149766
Target:  5'- cUCGAUCGCGGCGaGGaucaGCGCGCcGGc -3'
miRNA:   3'- cAGCUAGCGCUGCgCCa---CGCGCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 41330 0.72 0.157964
Target:  5'- -aCGGUCGUGACGcCGGUugaguacgauccGCGCGCcgccGGGa -3'
miRNA:   3'- caGCUAGCGCUGC-GCCA------------CGCGCG----CCC- -5'
28157 5' -60.5 NC_005887.1 + 8874 0.72 0.175586
Target:  5'- cGUCGAgaUCGCGACGCcGUacGCGCucGCGGa -3'
miRNA:   3'- -CAGCU--AGCGCUGCGcCA--CGCG--CGCCc -5'
28157 5' -60.5 NC_005887.1 + 34709 0.72 0.180257
Target:  5'- cGUCG-UCGCGcuUGCGGUGCGCgGCGa- -3'
miRNA:   3'- -CAGCuAGCGCu-GCGCCACGCG-CGCcc -5'
28157 5' -60.5 NC_005887.1 + 15384 0.7 0.216125
Target:  5'- gGUCGA-CGCcGCGCuGaucGCGCGCGGGc -3'
miRNA:   3'- -CAGCUaGCGcUGCGcCa--CGCGCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 11089 0.7 0.221722
Target:  5'- -aCGAUucCGCGugGCgcaucggcuGGUGCGCGCGa- -3'
miRNA:   3'- caGCUA--GCGCugCG---------CCACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 17164 0.7 0.239257
Target:  5'- --aGAUCGCGagGCGUGGgaGCGCGCGa- -3'
miRNA:   3'- cagCUAGCGC--UGCGCCa-CGCGCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.