Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 8650 | 0.68 | 0.524419 |
Target: 5'- uCGCC-AGCGUCgaacgaaaccUGCUGCGgugcugcCUUCGGCa -3' miRNA: 3'- -GCGGcUCGUAG----------ACGAUGU-------GAAGCCGc -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 32395 | 0.68 | 0.501936 |
Target: 5'- uCGCCG-GCAUCgGCgugugguccuacGCACUgCGGCGc -3' miRNA: 3'- -GCGGCuCGUAGaCGa-----------UGUGAaGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 37160 | 0.68 | 0.493482 |
Target: 5'- uCGCCGAGgcUgUGCUcgccCGCUUCGGUGc -3' miRNA: 3'- -GCGGCUCguAgACGAu---GUGAAGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 41019 | 0.68 | 0.493482 |
Target: 5'- gCGCCGaAGCgGUCgaGCaUGCGC-UCGGCGu -3' miRNA: 3'- -GCGGC-UCG-UAGa-CG-AUGUGaAGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 4323 | 0.68 | 0.493482 |
Target: 5'- gGCCGAGCAguucagaCUGCgugcgGCcgaGCgUCGGCGc -3' miRNA: 3'- gCGGCUCGUa------GACGa----UG---UGaAGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 15931 | 0.68 | 0.493482 |
Target: 5'- uGCUGGuGCGcCUGCUGCGCgcgGGCGu -3' miRNA: 3'- gCGGCU-CGUaGACGAUGUGaagCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 15156 | 0.68 | 0.493482 |
Target: 5'- -cUCGGGCAucaUCUGCgACACgcCGGCGg -3' miRNA: 3'- gcGGCUCGU---AGACGaUGUGaaGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 3612 | 0.69 | 0.483007 |
Target: 5'- gCGCCaGGCcgC-GCaGCGCUUCGGCc -3' miRNA: 3'- -GCGGcUCGuaGaCGaUGUGAAGCCGc -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 14365 | 0.69 | 0.483007 |
Target: 5'- uGCCGGGCAcCUGUUcgaguCGCcgcUCGGCGc -3' miRNA: 3'- gCGGCUCGUaGACGAu----GUGa--AGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 16336 | 0.69 | 0.483007 |
Target: 5'- uCGUCGA---UCUGCUGCAUcagcUCGGCGa -3' miRNA: 3'- -GCGGCUcguAGACGAUGUGa---AGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 8518 | 0.69 | 0.483007 |
Target: 5'- gCGCCGGGCGcUCgaucGCguugACGCggaucgcUCGGCGa -3' miRNA: 3'- -GCGGCUCGU-AGa---CGa---UGUGa------AGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 17307 | 0.69 | 0.472641 |
Target: 5'- aCGCCGGuucggcGCAccgCgUGCUGCACUUCcGCGa -3' miRNA: 3'- -GCGGCU------CGUa--G-ACGAUGUGAAGcCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 17363 | 0.69 | 0.462388 |
Target: 5'- gCGCCGAaccgGCGUUUGC-GCGCg-CGGCGc -3' miRNA: 3'- -GCGGCU----CGUAGACGaUGUGaaGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 15718 | 0.69 | 0.462388 |
Target: 5'- uCGgCGcGCAUCUGCgACACggcgcccugaUCGGCGa -3' miRNA: 3'- -GCgGCuCGUAGACGaUGUGa---------AGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 28485 | 0.69 | 0.462388 |
Target: 5'- aGCaCGAGCGcCUGCgcGCGC-UCGGCu -3' miRNA: 3'- gCG-GCUCGUaGACGa-UGUGaAGCCGc -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 3092 | 0.69 | 0.442241 |
Target: 5'- gGCCGAGCAUg-GCUuuGCccgCGGCGc -3' miRNA: 3'- gCGGCUCGUAgaCGAugUGaa-GCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 15661 | 0.7 | 0.422599 |
Target: 5'- aCGcCCGuGCG-CUGCgucucaGCUUCGGCGa -3' miRNA: 3'- -GC-GGCuCGUaGACGaug---UGAAGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 18490 | 0.7 | 0.384026 |
Target: 5'- gCGCCGAucaGCGUCgUGCUgacgacgGCGCcgCGGCGu -3' miRNA: 3'- -GCGGCU---CGUAG-ACGA-------UGUGaaGCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 41441 | 0.71 | 0.375877 |
Target: 5'- aCGUCGcGCAcggUCUGCUcgaACGCUUccCGGCGg -3' miRNA: 3'- -GCGGCuCGU---AGACGA---UGUGAA--GCCGC- -5' |
|||||||
28158 | 5' | -55.2 | NC_005887.1 | + | 30995 | 0.71 | 0.36696 |
Target: 5'- cCGCCGAGCGcgCUG-UGCACaa-GGCGa -3' miRNA: 3'- -GCGGCUCGUa-GACgAUGUGaagCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home