Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 27284 | 1.13 | 0.000436 |
Target: 5'- gGCACGACUUCCAUGCCGGACAGGUGCu -3' miRNA: 3'- -CGUGCUGAAGGUACGGCCUGUCCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 3891 | 0.74 | 0.259123 |
Target: 5'- aUACGACg-CCAUGCCGGAU--GUGCg -3' miRNA: 3'- cGUGCUGaaGGUACGGCCUGucCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 10972 | 0.73 | 0.29488 |
Target: 5'- gGC-CGACgucaUCUgcGCCGGcuGCAGGUGCa -3' miRNA: 3'- -CGuGCUGa---AGGuaCGGCC--UGUCCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 31124 | 0.72 | 0.334365 |
Target: 5'- aGCAgGGCgagCU-UGCCGGGCAGGccgUGCg -3' miRNA: 3'- -CGUgCUGaa-GGuACGGCCUGUCC---ACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 14485 | 0.72 | 0.351208 |
Target: 5'- cGCGCGuCgggUCCgcuugaacGUGUCGGACAGGUcGUa -3' miRNA: 3'- -CGUGCuGa--AGG--------UACGGCCUGUCCA-CG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 41328 | 0.7 | 0.443083 |
Target: 5'- aGguCGACggcgCCAUugccgacGCCGaGCAGGUGCg -3' miRNA: 3'- -CguGCUGaa--GGUA-------CGGCcUGUCCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 25181 | 0.7 | 0.444079 |
Target: 5'- cGCugGA--UCUcgGCCGGACAaccGGUcGCg -3' miRNA: 3'- -CGugCUgaAGGuaCGGCCUGU---CCA-CG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 40464 | 0.7 | 0.444079 |
Target: 5'- gGCACGuCggCCGUGCCGGGCAu---- -3' miRNA: 3'- -CGUGCuGaaGGUACGGCCUGUccacg -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 14058 | 0.7 | 0.464256 |
Target: 5'- cGCGCGGCgcauUCUucGUCGGGaacguCAGGUGCa -3' miRNA: 3'- -CGUGCUGa---AGGuaCGGCCU-----GUCCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 30663 | 0.69 | 0.505976 |
Target: 5'- aGCGuCGACUUCuuCAUGUCGGGCAGa--- -3' miRNA: 3'- -CGU-GCUGAAG--GUACGGCCUGUCcacg -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 30334 | 0.69 | 0.505976 |
Target: 5'- gGCACGAUcgUCGcGCCGGACGGcaaGCg -3' miRNA: 3'- -CGUGCUGaaGGUaCGGCCUGUCca-CG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 41391 | 0.68 | 0.58239 |
Target: 5'- uGCGCGACguguucUCCGacgaUGCCGaGCAGGUc- -3' miRNA: 3'- -CGUGCUGa-----AGGU----ACGGCcUGUCCAcg -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 17693 | 0.67 | 0.604732 |
Target: 5'- gGCACGAUgUUCGUgacgGCCGGcuacaACAaGGUGCc -3' miRNA: 3'- -CGUGCUGaAGGUA----CGGCC-----UGU-CCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 22081 | 0.67 | 0.637282 |
Target: 5'- aGCACGGCggCCGUcgggGCCcuucuguGGAaacugcugcCGGGUGCg -3' miRNA: 3'- -CGUGCUGaaGGUA----CGG-------CCU---------GUCCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 6992 | 0.66 | 0.66084 |
Target: 5'- gGCGCGGC--CCAUGCCGaGuuGCGGGauucGCu -3' miRNA: 3'- -CGUGCUGaaGGUACGGC-C--UGUCCa---CG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 37750 | 0.66 | 0.66084 |
Target: 5'- -gGCGucGCUUgCAUGCgGGGCGGcUGCu -3' miRNA: 3'- cgUGC--UGAAgGUACGgCCUGUCcACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 7155 | 0.66 | 0.672022 |
Target: 5'- cGCGCGA-UUCCGUGUucaGGAgCGcgucGGUGCg -3' miRNA: 3'- -CGUGCUgAAGGUACGg--CCU-GU----CCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 22260 | 0.66 | 0.672022 |
Target: 5'- -uGCGACcgCCGcGCCGGACAGa--- -3' miRNA: 3'- cgUGCUGaaGGUaCGGCCUGUCcacg -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 33151 | 0.66 | 0.683164 |
Target: 5'- aGC-CGA---CCGUGCCGcGGC-GGUGCu -3' miRNA: 3'- -CGuGCUgaaGGUACGGC-CUGuCCACG- -5' |
|||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 1437 | 0.66 | 0.683164 |
Target: 5'- aGCGCGACgc----GCgGGACAGGaUGUa -3' miRNA: 3'- -CGUGCUGaagguaCGgCCUGUCC-ACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home