Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28160 | 3' | -54.5 | NC_005887.1 | + | 647 | 0.66 | 0.71624 |
Target: 5'- cGCGCGGCgagcgcacgCgCAUGaCCGccGAcCAGGUGCu -3' miRNA: 3'- -CGUGCUGaa-------G-GUAC-GGC--CU-GUCCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 1437 | 0.66 | 0.683164 |
Target: 5'- aGCGCGACgc----GCgGGACAGGaUGUa -3' miRNA: 3'- -CGUGCUGaagguaCGgCCUGUCC-ACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 3891 | 0.74 | 0.259123 |
Target: 5'- aUACGACg-CCAUGCCGGAU--GUGCg -3' miRNA: 3'- cGUGCUGaaGGUACGGCCUGucCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 3946 | 0.66 | 0.71624 |
Target: 5'- gGCAUGGCgUCgUAUGCCGGGCuGccGCc -3' miRNA: 3'- -CGUGCUGaAG-GUACGGCCUGuCcaCG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 5003 | 0.66 | 0.705285 |
Target: 5'- uGCGCGuCUUCCAUcccgaggauCUGGAuCAGGcGCa -3' miRNA: 3'- -CGUGCuGAAGGUAc--------GGCCU-GUCCaCG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 6992 | 0.66 | 0.66084 |
Target: 5'- gGCGCGGC--CCAUGCCGaGuuGCGGGauucGCu -3' miRNA: 3'- -CGUGCUGaaGGUACGGC-C--UGUCCa---CG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 7155 | 0.66 | 0.672022 |
Target: 5'- cGCGCGA-UUCCGUGUucaGGAgCGcgucGGUGCg -3' miRNA: 3'- -CGUGCUgAAGGUACGg--CCU-GU----CCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 7504 | 0.66 | 0.705285 |
Target: 5'- uCACGACgcgcacgCCAgcccaaacgagGCgGcGGCGGGUGCg -3' miRNA: 3'- cGUGCUGaa-----GGUa----------CGgC-CUGUCCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 10972 | 0.73 | 0.29488 |
Target: 5'- gGC-CGACgucaUCUgcGCCGGcuGCAGGUGCa -3' miRNA: 3'- -CGuGCUGa---AGGuaCGGCC--UGUCCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 14058 | 0.7 | 0.464256 |
Target: 5'- cGCGCGGCgcauUCUucGUCGGGaacguCAGGUGCa -3' miRNA: 3'- -CGUGCUGa---AGGuaCGGCCU-----GUCCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 14485 | 0.72 | 0.351208 |
Target: 5'- cGCGCGuCgggUCCgcuugaacGUGUCGGACAGGUcGUa -3' miRNA: 3'- -CGUGCuGa--AGG--------UACGGCCUGUCCA-CG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 17693 | 0.67 | 0.604732 |
Target: 5'- gGCACGAUgUUCGUgacgGCCGGcuacaACAaGGUGCc -3' miRNA: 3'- -CGUGCUGaAGGUA----CGGCC-----UGU-CCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 22081 | 0.67 | 0.637282 |
Target: 5'- aGCACGGCggCCGUcgggGCCcuucuguGGAaacugcugcCGGGUGCg -3' miRNA: 3'- -CGUGCUGaaGGUA----CGG-------CCU---------GUCCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 22260 | 0.66 | 0.672022 |
Target: 5'- -uGCGACcgCCGcGCCGGACAGa--- -3' miRNA: 3'- cgUGCUGaaGGUaCGGCCUGUCcacg -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 25181 | 0.7 | 0.444079 |
Target: 5'- cGCugGA--UCUcgGCCGGACAaccGGUcGCg -3' miRNA: 3'- -CGugCUgaAGGuaCGGCCUGU---CCA-CG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 26978 | 0.66 | 0.694256 |
Target: 5'- -gGCGACgg-UGUGCCGGugAGGUuCa -3' miRNA: 3'- cgUGCUGaagGUACGGCCugUCCAcG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 27284 | 1.13 | 0.000436 |
Target: 5'- gGCACGACUUCCAUGCCGGACAGGUGCu -3' miRNA: 3'- -CGUGCUGAAGGUACGGCCUGUCCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 27398 | 0.66 | 0.71624 |
Target: 5'- uGCGCGugGCgcagUCgAcgugGCCGGACGaGUGCg -3' miRNA: 3'- -CGUGC--UGa---AGgUa---CGGCCUGUcCACG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 30334 | 0.69 | 0.505976 |
Target: 5'- gGCACGAUcgUCGcGCCGGACGGcaaGCg -3' miRNA: 3'- -CGUGCUGaaGGUaCGGCCUGUCca-CG- -5' |
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28160 | 3' | -54.5 | NC_005887.1 | + | 30663 | 0.69 | 0.505976 |
Target: 5'- aGCGuCGACUUCuuCAUGUCGGGCAGa--- -3' miRNA: 3'- -CGU-GCUGAAG--GUACGGCCUGUCcacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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