Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28160 | 3' | -54.5 | NC_005887.1 | + | 14058 | 0.7 | 0.464256 |
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Target: 5'- cGCGCGGCgcauUCUucGUCGGGaacguCAGGUGCa -3' miRNA: 3'- -CGUGCUGa---AGGuaCGGCCU-----GUCCACG- -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 25181 | 0.7 | 0.444079 |
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Target: 5'- cGCugGA--UCUcgGCCGGACAaccGGUcGCg -3' miRNA: 3'- -CGugCUgaAGGuaCGGCCUGU---CCA-CG- -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 40464 | 0.7 | 0.444079 |
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Target: 5'- gGCACGuCggCCGUGCCGGGCAu---- -3' miRNA: 3'- -CGUGCuGaaGGUACGGCCUGUccacg -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 41328 | 0.7 | 0.443083 |
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Target: 5'- aGguCGACggcgCCAUugccgacGCCGaGCAGGUGCg -3' miRNA: 3'- -CguGCUGaa--GGUA-------CGGCcUGUCCACG- -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 14485 | 0.72 | 0.351208 |
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Target: 5'- cGCGCGuCgggUCCgcuugaacGUGUCGGACAGGUcGUa -3' miRNA: 3'- -CGUGCuGa--AGG--------UACGGCCUGUCCA-CG- -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 31124 | 0.72 | 0.334365 |
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Target: 5'- aGCAgGGCgagCU-UGCCGGGCAGGccgUGCg -3' miRNA: 3'- -CGUgCUGaa-GGuACGGCCUGUCC---ACG- -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 10972 | 0.73 | 0.29488 |
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Target: 5'- gGC-CGACgucaUCUgcGCCGGcuGCAGGUGCa -3' miRNA: 3'- -CGuGCUGa---AGGuaCGGCC--UGUCCACG- -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 3891 | 0.74 | 0.259123 |
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Target: 5'- aUACGACg-CCAUGCCGGAU--GUGCg -3' miRNA: 3'- cGUGCUGaaGGUACGGCCUGucCACG- -5' |
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| 28160 | 3' | -54.5 | NC_005887.1 | + | 27284 | 1.13 | 0.000436 |
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Target: 5'- gGCACGACUUCCAUGCCGGACAGGUGCu -3' miRNA: 3'- -CGUGCUGAAGGUACGGCCUGUCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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