miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28160 5' -58.1 NC_005887.1 + 946 0.69 0.335244
Target:  5'- cCGCcugACUCGUCCGGCgGCG-CGGg-- -3'
miRNA:   3'- aGCG---UGAGCAGGCCGgUGCaGCUgac -5'
28160 5' -58.1 NC_005887.1 + 1388 0.7 0.31174
Target:  5'- gUCGCGCUCGUUCaucaugGGCC-CGcUCGGCa- -3'
miRNA:   3'- -AGCGUGAGCAGG------CCGGuGC-AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 2061 0.72 0.224392
Target:  5'- cCGCGCUCGUaguagCCGGCCGgcagguUGUCGAUg- -3'
miRNA:   3'- aGCGUGAGCA-----GGCCGGU------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 4252 0.69 0.343362
Target:  5'- -aGCACUUcgGUCgCGGUCAUGUCGccGCUGu -3'
miRNA:   3'- agCGUGAG--CAG-GCCGGUGCAGC--UGAC- -5'
28160 5' -58.1 NC_005887.1 + 4427 0.7 0.31174
Target:  5'- gUCGUACUCGacauccacaUCCGcGCCGgCGUCGAUc- -3'
miRNA:   3'- -AGCGUGAGC---------AGGC-CGGU-GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 6928 0.66 0.511883
Target:  5'- cCGCaACUCGgcaUgGGCCGCGcCGuCUGg -3'
miRNA:   3'- aGCG-UGAGCa--GgCCGGUGCaGCuGAC- -5'
28160 5' -58.1 NC_005887.1 + 7792 0.73 0.202038
Target:  5'- uUCGCGCUCGUacCCGGC-AUGUCGAa-- -3'
miRNA:   3'- -AGCGUGAGCA--GGCCGgUGCAGCUgac -5'
28160 5' -58.1 NC_005887.1 + 8723 0.72 0.207438
Target:  5'- -aGCGCuUCGUCgCGGCCACGaaggauUCGACg- -3'
miRNA:   3'- agCGUG-AGCAG-GCCGGUGC------AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 9324 0.69 0.368555
Target:  5'- aCGCACaCGUCCGGUa--GUCGAUg- -3'
miRNA:   3'- aGCGUGaGCAGGCCGgugCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 10283 0.69 0.327268
Target:  5'- aCGCGC-CGUCCGGCgCGgGcaUCGACg- -3'
miRNA:   3'- aGCGUGaGCAGGCCG-GUgC--AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 12344 0.66 0.491308
Target:  5'- aCGuCGCUCG-CCGGCCAgGcggUGACg- -3'
miRNA:   3'- aGC-GUGAGCaGGCCGGUgCa--GCUGac -5'
28160 5' -58.1 NC_005887.1 + 12662 0.72 0.212963
Target:  5'- -aGCACgccgagCGUCgCGGCCGgGUCGGCg- -3'
miRNA:   3'- agCGUGa-----GCAG-GCCGGUgCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 13285 0.69 0.342544
Target:  5'- cUGC-CUCGUCUGGCgucagcagcgacaCACGUCGGCc- -3'
miRNA:   3'- aGCGuGAGCAGGCCG-------------GUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 16300 0.69 0.327268
Target:  5'- gUGCGCUCG-CCGGCCgGCGuaUCGAUcgUGa -3'
miRNA:   3'- aGCGUGAGCaGGCCGG-UGC--AGCUG--AC- -5'
28160 5' -58.1 NC_005887.1 + 16467 0.69 0.349128
Target:  5'- aUGCGCUCGaccgcgcggcaggaUCCGGCgggCugGUCGGCg- -3'
miRNA:   3'- aGCGUGAGC--------------AGGCCG---GugCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 17435 0.68 0.404067
Target:  5'- aUCGCGCUCGUCgagcgcuaCGGCC-CGaaucCGACg- -3'
miRNA:   3'- -AGCGUGAGCAG--------GCCGGuGCa---GCUGac -5'
28160 5' -58.1 NC_005887.1 + 17739 0.72 0.207438
Target:  5'- -aGaCGCUCGgcaCGGCCGCG-CGGCUGa -3'
miRNA:   3'- agC-GUGAGCag-GCCGGUGCaGCUGAC- -5'
28160 5' -58.1 NC_005887.1 + 20705 0.71 0.242509
Target:  5'- cCGCAacagacaGUCCGGCCACGUCGu--- -3'
miRNA:   3'- aGCGUgag----CAGGCCGGUGCAGCugac -5'
28160 5' -58.1 NC_005887.1 + 21401 0.67 0.441665
Target:  5'- gUCGUGUUCGUaCCGGCCGaugcgGUCGGCg- -3'
miRNA:   3'- -AGCGUGAGCA-GGCCGGUg----CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 23186 0.71 0.242509
Target:  5'- gUCGCGCUCGcgaUCaCGGCCGgGggCGGCUa -3'
miRNA:   3'- -AGCGUGAGC---AG-GCCGGUgCa-GCUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.