miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28160 5' -58.1 NC_005887.1 + 23578 0.69 0.343362
Target:  5'- cCGCGCguUCGUCagcgCGGCCgaacACGUCGGCa- -3'
miRNA:   3'- aGCGUG--AGCAG----GCCGG----UGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 26913 0.67 0.422615
Target:  5'- cUGCGCccgagUCG-CUGGCCGCcGUCGACg- -3'
miRNA:   3'- aGCGUG-----AGCaGGCCGGUG-CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 27086 0.66 0.491308
Target:  5'- cCGCGCUUGcugcgCUGGUucgacacgCGCGUCGACUu -3'
miRNA:   3'- aGCGUGAGCa----GGCCG--------GUGCAGCUGAc -5'
28160 5' -58.1 NC_005887.1 + 27216 0.68 0.394988
Target:  5'- cCGCGCccguggcCGUUCGGCCGCGUgaucgcCGACg- -3'
miRNA:   3'- aGCGUGa------GCAGGCCGGUGCA------GCUGac -5'
28160 5' -58.1 NC_005887.1 + 27254 0.67 0.471125
Target:  5'- aUCGCGCg---CCGGcCCGCGUCGcCa- -3'
miRNA:   3'- -AGCGUGagcaGGCC-GGUGCAGCuGac -5'
28160 5' -58.1 NC_005887.1 + 27319 1.07 0.000566
Target:  5'- cUCGCACUCGUCCGGCCACGUCGACUGc -3'
miRNA:   3'- -AGCGUGAGCAGGCCGGUGCAGCUGAC- -5'
28160 5' -58.1 NC_005887.1 + 29419 0.67 0.471125
Target:  5'- cUCGacaGCUCGU-CGGCCGaguaguCGUCGGCg- -3'
miRNA:   3'- -AGCg--UGAGCAgGCCGGU------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 30104 0.66 0.532806
Target:  5'- -gGCGCUCGcCUaugagGGUgGCGUCGGCg- -3'
miRNA:   3'- agCGUGAGCaGG-----CCGgUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 30617 0.66 0.491308
Target:  5'- cUCGCGCagcgCGUCCGGCagauccggauCGUUGAUg- -3'
miRNA:   3'- -AGCGUGa---GCAGGCCGgu--------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 30941 0.71 0.268539
Target:  5'- gCGCGCUCGg-CGGUgAUGUCGGCg- -3'
miRNA:   3'- aGCGUGAGCagGCCGgUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 31266 0.77 0.096399
Target:  5'- -aGUACUCGU-CGGCCGCGUCGAUc- -3'
miRNA:   3'- agCGUGAGCAgGCCGGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 32491 0.75 0.142311
Target:  5'- aUCGCcgccggccACaUCGccgCCGGCCACGUCGACg- -3'
miRNA:   3'- -AGCG--------UG-AGCa--GGCCGGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 33247 0.72 0.207438
Target:  5'- aCGgGCUCGUCCGGCCGCuaCGAa-- -3'
miRNA:   3'- aGCgUGAGCAGGCCGGUGcaGCUgac -5'
28160 5' -58.1 NC_005887.1 + 33563 0.67 0.447474
Target:  5'- aUCGCGCggaugcugaacggCGaUCCGGaUUACGUCGACa- -3'
miRNA:   3'- -AGCGUGa------------GC-AGGCC-GGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 35817 0.67 0.461192
Target:  5'- aCGCGCuguguuccUCGUgC-GCCGCGUCGGCg- -3'
miRNA:   3'- aGCGUG--------AGCAgGcCGGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 35911 0.71 0.271262
Target:  5'- gCGCACUucgaucucggccggcCGUCCGGCCACa-CGGCg- -3'
miRNA:   3'- aGCGUGA---------------GCAGGCCGGUGcaGCUGac -5'
28160 5' -58.1 NC_005887.1 + 36285 0.69 0.36598
Target:  5'- cUCGCucgACUCGUCCGGUUggccgaucugcgcgGCgGUCGACg- -3'
miRNA:   3'- -AGCG---UGAGCAGGCCGG--------------UG-CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 38299 0.73 0.204183
Target:  5'- -aGCGCUCGaccaucCCGGCCACGcgcaaggcugcgcgCGACUGg -3'
miRNA:   3'- agCGUGAGCa-----GGCCGGUGCa-------------GCUGAC- -5'
28160 5' -58.1 NC_005887.1 + 39919 0.72 0.236338
Target:  5'- gCGCGCagaUCGagCCGGgCGCGUCGACg- -3'
miRNA:   3'- aGCGUG---AGCa-GGCCgGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 40432 0.7 0.282378
Target:  5'- cUCGCGCgcgacggCGgcaCGGCCGCGcUCGACg- -3'
miRNA:   3'- -AGCGUGa------GCag-GCCGGUGC-AGCUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.