miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28160 5' -58.1 NC_005887.1 + 1388 0.7 0.31174
Target:  5'- gUCGCGCUCGUUCaucaugGGCC-CGcUCGGCa- -3'
miRNA:   3'- -AGCGUGAGCAGG------CCGGuGC-AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 16467 0.69 0.349128
Target:  5'- aUGCGCUCGaccgcgcggcaggaUCCGGCgggCugGUCGGCg- -3'
miRNA:   3'- aGCGUGAGC--------------AGGCCG---GugCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 10283 0.69 0.327268
Target:  5'- aCGCGC-CGUCCGGCgCGgGcaUCGACg- -3'
miRNA:   3'- aGCGUGaGCAGGCCG-GUgC--AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 4427 0.7 0.31174
Target:  5'- gUCGUACUCGacauccacaUCCGcGCCGgCGUCGAUc- -3'
miRNA:   3'- -AGCGUGAGC---------AGGC-CGGU-GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 40432 0.7 0.282378
Target:  5'- cUCGCGCgcgacggCGgcaCGGCCGCGcUCGACg- -3'
miRNA:   3'- -AGCGUGa------GCag-GCCGGUGC-AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 20705 0.71 0.242509
Target:  5'- cCGCAacagacaGUCCGGCCACGUCGu--- -3'
miRNA:   3'- aGCGUgag----CAGGCCGGUGCAGCugac -5'
28160 5' -58.1 NC_005887.1 + 2061 0.72 0.224392
Target:  5'- cCGCGCUCGUaguagCCGGCCGgcagguUGUCGAUg- -3'
miRNA:   3'- aGCGUGAGCA-----GGCCGGU------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 12662 0.72 0.212963
Target:  5'- -aGCACgccgagCGUCgCGGCCGgGUCGGCg- -3'
miRNA:   3'- agCGUGa-----GCAG-GCCGGUgCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 33247 0.72 0.207438
Target:  5'- aCGgGCUCGUCCGGCCGCuaCGAa-- -3'
miRNA:   3'- aGCgUGAGCAGGCCGGUGcaGCUgac -5'
28160 5' -58.1 NC_005887.1 + 38299 0.73 0.204183
Target:  5'- -aGCGCUCGaccaucCCGGCCACGcgcaaggcugcgcgCGACUGg -3'
miRNA:   3'- agCGUGAGCa-----GGCCGGUGCa-------------GCUGAC- -5'
28160 5' -58.1 NC_005887.1 + 16300 0.69 0.327268
Target:  5'- gUGCGCUCG-CCGGCCgGCGuaUCGAUcgUGa -3'
miRNA:   3'- aGCGUGAGCaGGCCGG-UGC--AGCUG--AC- -5'
28160 5' -58.1 NC_005887.1 + 946 0.69 0.335244
Target:  5'- cCGCcugACUCGUCCGGCgGCG-CGGg-- -3'
miRNA:   3'- aGCG---UGAGCAGGCCGgUGCaGCUgac -5'
28160 5' -58.1 NC_005887.1 + 32491 0.75 0.142311
Target:  5'- aUCGCcgccggccACaUCGccgCCGGCCACGUCGACg- -3'
miRNA:   3'- -AGCG--------UG-AGCa--GGCCGGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 41748 0.67 0.45137
Target:  5'- cUCGCGCagcucgcuaccuUCGUCCGGCUcgccaACGUaGACg- -3'
miRNA:   3'- -AGCGUG------------AGCAGGCCGG-----UGCAgCUGac -5'
28160 5' -58.1 NC_005887.1 + 33563 0.67 0.447474
Target:  5'- aUCGCGCggaugcugaacggCGaUCCGGaUUACGUCGACa- -3'
miRNA:   3'- -AGCGUGa------------GC-AGGCC-GGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 21401 0.67 0.441665
Target:  5'- gUCGUGUUCGUaCCGGCCGaugcgGUCGGCg- -3'
miRNA:   3'- -AGCGUGAGCA-GGCCGGUg----CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 27216 0.68 0.394988
Target:  5'- cCGCGCccguggcCGUUCGGCCGCGUgaucgcCGACg- -3'
miRNA:   3'- aGCGUGa------GCAGGCCGGUGCA------GCUGac -5'
28160 5' -58.1 NC_005887.1 + 23578 0.69 0.343362
Target:  5'- cCGCGCguUCGUCagcgCGGCCgaacACGUCGGCa- -3'
miRNA:   3'- aGCGUG--AGCAG----GCCGG----UGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 4252 0.69 0.343362
Target:  5'- -aGCACUUcgGUCgCGGUCAUGUCGccGCUGu -3'
miRNA:   3'- agCGUGAG--CAG-GCCGGUGCAGC--UGAC- -5'
28160 5' -58.1 NC_005887.1 + 13285 0.69 0.342544
Target:  5'- cUGC-CUCGUCUGGCgucagcagcgacaCACGUCGGCc- -3'
miRNA:   3'- aGCGuGAGCAGGCCG-------------GUGCAGCUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.