miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28160 5' -58.1 NC_005887.1 + 30617 0.66 0.491308
Target:  5'- cUCGCGCagcgCGUCCGGCagauccggauCGUUGAUg- -3'
miRNA:   3'- -AGCGUGa---GCAGGCCGgu--------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 17435 0.68 0.404067
Target:  5'- aUCGCGCUCGUCgagcgcuaCGGCC-CGaaucCGACg- -3'
miRNA:   3'- -AGCGUGAGCAG--------GCCGGuGCa---GCUGac -5'
28160 5' -58.1 NC_005887.1 + 26913 0.67 0.422615
Target:  5'- cUGCGCccgagUCG-CUGGCCGCcGUCGACg- -3'
miRNA:   3'- aGCGUG-----AGCaGGCCGGUG-CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 41978 0.67 0.448446
Target:  5'- gCGCGCUCGccuaUCagcagcacggccugCGGcCCACGUCGAgUGu -3'
miRNA:   3'- aGCGUGAGC----AG--------------GCC-GGUGCAGCUgAC- -5'
28160 5' -58.1 NC_005887.1 + 35817 0.67 0.461192
Target:  5'- aCGCGCuguguuccUCGUgC-GCCGCGUCGGCg- -3'
miRNA:   3'- aGCGUG--------AGCAgGcCGGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 27254 0.67 0.471125
Target:  5'- aUCGCGCg---CCGGcCCGCGUCGcCa- -3'
miRNA:   3'- -AGCGUGagcaGGCC-GGUGCAGCuGac -5'
28160 5' -58.1 NC_005887.1 + 29419 0.67 0.471125
Target:  5'- cUCGacaGCUCGU-CGGCCGaguaguCGUCGGCg- -3'
miRNA:   3'- -AGCg--UGAGCAgGCCGGU------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 12344 0.66 0.491308
Target:  5'- aCGuCGCUCG-CCGGCCAgGcggUGACg- -3'
miRNA:   3'- aGC-GUGAGCaGGCCGGUgCa--GCUGac -5'
28160 5' -58.1 NC_005887.1 + 27086 0.66 0.491308
Target:  5'- cCGCGCUUGcugcgCUGGUucgacacgCGCGUCGACUu -3'
miRNA:   3'- aGCGUGAGCa----GGCCG--------GUGCAGCUGAc -5'
28160 5' -58.1 NC_005887.1 + 9324 0.69 0.368555
Target:  5'- aCGCACaCGUCCGGUa--GUCGAUg- -3'
miRNA:   3'- aGCGUGaGCAGGCCGgugCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 36285 0.69 0.36598
Target:  5'- cUCGCucgACUCGUCCGGUUggccgaucugcgcgGCgGUCGACg- -3'
miRNA:   3'- -AGCG---UGAGCAGGCCGG--------------UG-CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 16467 0.69 0.349128
Target:  5'- aUGCGCUCGaccgcgcggcaggaUCCGGCgggCugGUCGGCg- -3'
miRNA:   3'- aGCGUGAGC--------------AGGCCG---GugCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 31266 0.77 0.096399
Target:  5'- -aGUACUCGU-CGGCCGCGUCGAUc- -3'
miRNA:   3'- agCGUGAGCAgGCCGGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 17739 0.72 0.207438
Target:  5'- -aGaCGCUCGgcaCGGCCGCG-CGGCUGa -3'
miRNA:   3'- agC-GUGAGCag-GCCGGUGCaGCUGAC- -5'
28160 5' -58.1 NC_005887.1 + 8723 0.72 0.207438
Target:  5'- -aGCGCuUCGUCgCGGCCACGaaggauUCGACg- -3'
miRNA:   3'- agCGUG-AGCAG-GCCGGUGC------AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 39919 0.72 0.236338
Target:  5'- gCGCGCagaUCGagCCGGgCGCGUCGACg- -3'
miRNA:   3'- aGCGUG---AGCa-GGCCgGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 23186 0.71 0.242509
Target:  5'- gUCGCGCUCGcgaUCaCGGCCGgGggCGGCUa -3'
miRNA:   3'- -AGCGUGAGC---AG-GCCGGUgCa-GCUGAc -5'
28160 5' -58.1 NC_005887.1 + 30941 0.71 0.268539
Target:  5'- gCGCGCUCGg-CGGUgAUGUCGGCg- -3'
miRNA:   3'- aGCGUGAGCagGCCGgUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 35911 0.71 0.271262
Target:  5'- gCGCACUucgaucucggccggcCGUCCGGCCACa-CGGCg- -3'
miRNA:   3'- aGCGUGA---------------GCAGGCCGGUGcaGCUGac -5'
28160 5' -58.1 NC_005887.1 + 1388 0.7 0.31174
Target:  5'- gUCGCGCUCGUUCaucaugGGCC-CGcUCGGCa- -3'
miRNA:   3'- -AGCGUGAGCAGG------CCGGuGC-AGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.