miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28160 5' -58.1 NC_005887.1 + 13285 0.69 0.342544
Target:  5'- cUGC-CUCGUCUGGCgucagcagcgacaCACGUCGGCc- -3'
miRNA:   3'- aGCGuGAGCAGGCCG-------------GUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 946 0.69 0.335244
Target:  5'- cCGCcugACUCGUCCGGCgGCG-CGGg-- -3'
miRNA:   3'- aGCG---UGAGCAGGCCGgUGCaGCUgac -5'
28160 5' -58.1 NC_005887.1 + 16300 0.69 0.327268
Target:  5'- gUGCGCUCG-CCGGCCgGCGuaUCGAUcgUGa -3'
miRNA:   3'- aGCGUGAGCaGGCCGG-UGC--AGCUG--AC- -5'
28160 5' -58.1 NC_005887.1 + 10283 0.69 0.327268
Target:  5'- aCGCGC-CGUCCGGCgCGgGcaUCGACg- -3'
miRNA:   3'- aGCGUGaGCAGGCCG-GUgC--AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 4427 0.7 0.31174
Target:  5'- gUCGUACUCGacauccacaUCCGcGCCGgCGUCGAUc- -3'
miRNA:   3'- -AGCGUGAGC---------AGGC-CGGU-GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 1388 0.7 0.31174
Target:  5'- gUCGCGCUCGUUCaucaugGGCC-CGcUCGGCa- -3'
miRNA:   3'- -AGCGUGAGCAGG------CCGGuGC-AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 40432 0.7 0.282378
Target:  5'- cUCGCGCgcgacggCGgcaCGGCCGCGcUCGACg- -3'
miRNA:   3'- -AGCGUGa------GCag-GCCGGUGC-AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 35911 0.71 0.271262
Target:  5'- gCGCACUucgaucucggccggcCGUCCGGCCACa-CGGCg- -3'
miRNA:   3'- aGCGUGA---------------GCAGGCCGGUGcaGCUGac -5'
28160 5' -58.1 NC_005887.1 + 30941 0.71 0.268539
Target:  5'- gCGCGCUCGg-CGGUgAUGUCGGCg- -3'
miRNA:   3'- aGCGUGAGCagGCCGgUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 20705 0.71 0.242509
Target:  5'- cCGCAacagacaGUCCGGCCACGUCGu--- -3'
miRNA:   3'- aGCGUgag----CAGGCCGGUGCAGCugac -5'
28160 5' -58.1 NC_005887.1 + 23186 0.71 0.242509
Target:  5'- gUCGCGCUCGcgaUCaCGGCCGgGggCGGCUa -3'
miRNA:   3'- -AGCGUGAGC---AG-GCCGGUgCa-GCUGAc -5'
28160 5' -58.1 NC_005887.1 + 39919 0.72 0.236338
Target:  5'- gCGCGCagaUCGagCCGGgCGCGUCGACg- -3'
miRNA:   3'- aGCGUG---AGCa-GGCCgGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 2061 0.72 0.224392
Target:  5'- cCGCGCUCGUaguagCCGGCCGgcagguUGUCGAUg- -3'
miRNA:   3'- aGCGUGAGCA-----GGCCGGU------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 12662 0.72 0.212963
Target:  5'- -aGCACgccgagCGUCgCGGCCGgGUCGGCg- -3'
miRNA:   3'- agCGUGa-----GCAG-GCCGGUgCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 8723 0.72 0.207438
Target:  5'- -aGCGCuUCGUCgCGGCCACGaaggauUCGACg- -3'
miRNA:   3'- agCGUG-AGCAG-GCCGGUGC------AGCUGac -5'
28160 5' -58.1 NC_005887.1 + 17739 0.72 0.207438
Target:  5'- -aGaCGCUCGgcaCGGCCGCG-CGGCUGa -3'
miRNA:   3'- agC-GUGAGCag-GCCGGUGCaGCUGAC- -5'
28160 5' -58.1 NC_005887.1 + 33247 0.72 0.207438
Target:  5'- aCGgGCUCGUCCGGCCGCuaCGAa-- -3'
miRNA:   3'- aGCgUGAGCAGGCCGGUGcaGCUgac -5'
28160 5' -58.1 NC_005887.1 + 38299 0.73 0.204183
Target:  5'- -aGCGCUCGaccaucCCGGCCACGcgcaaggcugcgcgCGACUGg -3'
miRNA:   3'- agCGUGAGCa-----GGCCGGUGCa-------------GCUGAC- -5'
28160 5' -58.1 NC_005887.1 + 7792 0.73 0.202038
Target:  5'- uUCGCGCUCGUacCCGGC-AUGUCGAa-- -3'
miRNA:   3'- -AGCGUGAGCA--GGCCGgUGCAGCUgac -5'
28160 5' -58.1 NC_005887.1 + 32491 0.75 0.142311
Target:  5'- aUCGCcgccggccACaUCGccgCCGGCCACGUCGACg- -3'
miRNA:   3'- -AGCG--------UG-AGCa--GGCCGGUGCAGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.