Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 1310 | 0.7 | 0.285979 |
|
Target: 5'- cGACGuuuUCGcGuGCUGaGCGCCGCG-CAGCg -3' miRNA: 3'- -UUGU---AGC-C-CGACaCGCGGCGUaGUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 14200 | 0.7 | 0.281597 |
|
Target: 5'- --uGUCGGGCgcggccucggacagGgcgGCGCCGCGcuguUCGGCg -3' miRNA: 3'- uugUAGCCCGa-------------Ca--CGCGGCGU----AGUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 41435 | 0.7 | 0.264599 |
|
Target: 5'- cAGCGccucgUGGGCUaUGCGCUGC-UCGGCa -3' miRNA: 3'- -UUGUa----GCCCGAcACGCGGCGuAGUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 35817 | 0.71 | 0.257766 |
|
Target: 5'- ----aCGcGCUguguuccucGUGCGCCGCGUCGGCg -3' miRNA: 3'- uuguaGCcCGA---------CACGCGGCGUAGUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 11103 | 0.71 | 0.242598 |
|
Target: 5'- cGCAUCGGcuggugcgcgcgaaGCUGgccgagGCGCCGUggCGGCg -3' miRNA: 3'- uUGUAGCC--------------CGACa-----CGCGGCGuaGUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 5408 | 0.71 | 0.238132 |
|
Target: 5'- gAACcggCGGGCg--GCGCCGCAgcgacCGGCg -3' miRNA: 3'- -UUGua-GCCCGacaCGCGGCGUa----GUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 9224 | 0.73 | 0.167085 |
|
Target: 5'- gAAgAUCGGuccuaGCgaacUGCGCCGCGUCGGCg -3' miRNA: 3'- -UUgUAGCC-----CGac--ACGCGGCGUAGUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 17280 | 0.81 | 0.047102 |
|
Target: 5'- aGACGUCGGGCg--GCGCCGCGcgcgcaaacgccgguUCGGCg -3' miRNA: 3'- -UUGUAGCCCGacaCGCGGCGU---------------AGUCG- -5' |
|||||||
| 28162 | 5' | -57.3 | NC_005887.1 | + | 28185 | 1.1 | 0.000318 |
|
Target: 5'- cAACAUCGGGCUGUGCGCCGCAUCAGCg -3' miRNA: 3'- -UUGUAGCCCGACACGCGGCGUAGUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home