miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 42091 0.71 0.342049
Target:  5'- --cGCgUgGGGCGCGAugcCGCGUCGACg -3'
miRNA:   3'- aacCGaAgCUCGUGCUu--GCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 41859 0.67 0.594757
Target:  5'- gUGGUUggUUG-GCAUGAACGCGacccacgUCGGCa -3'
miRNA:   3'- aACCGA--AGCuCGUGCUUGCGC-------AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 41276 0.67 0.595887
Target:  5'- -cGGUcaCGGGCACGAcgACGCG-CGGg -3'
miRNA:   3'- aaCCGaaGCUCGUGCU--UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 41271 0.67 0.584596
Target:  5'- aUGGCgccgUCGAccugcGCACGGGCGCG-CuGCu -3'
miRNA:   3'- aACCGa---AGCU-----CGUGCUUGCGCaGcUG- -5'
28163 3' -54.7 NC_005887.1 + 41051 0.68 0.507225
Target:  5'- -aGGCUUCGAGCuCGGGCaCGUacaucaGGCc -3'
miRNA:   3'- aaCCGAAGCUCGuGCUUGcGCAg-----CUG- -5'
28163 3' -54.7 NC_005887.1 + 40554 0.67 0.58347
Target:  5'- cUGGCgcUCGcGCACGAguucucgGCGCGcUCGAg -3'
miRNA:   3'- aACCGa-AGCuCGUGCU-------UGCGC-AGCUg -5'
28163 3' -54.7 NC_005887.1 + 40352 0.72 0.314811
Target:  5'- cUGGCcgUCGAGCGCGGccgugccgcucgucGCGCG-CGAg -3'
miRNA:   3'- aACCGa-AGCUCGUGCU--------------UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 39917 0.8 0.099032
Target:  5'- gUGcGCgcagaUCGAGC-CGGGCGCGUCGACg -3'
miRNA:   3'- aAC-CGa----AGCUCGuGCUUGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 38590 0.71 0.359367
Target:  5'- -cGGUgucuuugUCGAGCGCGAuguaGCGCuUCGGCc -3'
miRNA:   3'- aaCCGa------AGCUCGUGCU----UGCGcAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 37140 0.66 0.629916
Target:  5'- --cGCUUCG-GUGCGAACGcCGUCaGCg -3'
miRNA:   3'- aacCGAAGCuCGUGCUUGC-GCAGcUG- -5'
28163 3' -54.7 NC_005887.1 + 36387 0.67 0.573348
Target:  5'- cUGGa-UCGAGUGCGcg-GCGUCGACc -3'
miRNA:   3'- aACCgaAGCUCGUGCuugCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 36123 0.75 0.207683
Target:  5'- -cGGCgu---GCGCGAGCGCGUCGAg -3'
miRNA:   3'- aaCCGaagcuCGUGCUUGCGCAGCUg -5'
28163 3' -54.7 NC_005887.1 + 36056 0.71 0.368253
Target:  5'- -cGGCUguccaUCGAGCacaucacggGCGAACGCGgggCGAa -3'
miRNA:   3'- aaCCGA-----AGCUCG---------UGCUUGCGCa--GCUg -5'
28163 3' -54.7 NC_005887.1 + 35642 0.7 0.434536
Target:  5'- -gGGCUgagcggugCGAGCuCG-ACGCuGUCGACa -3'
miRNA:   3'- aaCCGAa-------GCUCGuGCuUGCG-CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 35467 0.66 0.663962
Target:  5'- -gGGCgaaggcCGuGCGCGGGCGCaUCGAg -3'
miRNA:   3'- aaCCGaa----GCuCGUGCUUGCGcAGCUg -5'
28163 3' -54.7 NC_005887.1 + 34814 0.66 0.618557
Target:  5'- --aGCuUUCGAGCAU---CGCGUCGGCc -3'
miRNA:   3'- aacCG-AAGCUCGUGcuuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 34544 0.68 0.539945
Target:  5'- -gGGCgacagcuucUCGGGCGCGAGcCGCG-CGAa -3'
miRNA:   3'- aaCCGa--------AGCUCGUGCUU-GCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 33947 0.73 0.264637
Target:  5'- -cGGCgcucggCGAGCACGu-CGCGUgCGGCg -3'
miRNA:   3'- aaCCGaa----GCUCGUGCuuGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 32808 0.69 0.444558
Target:  5'- --cGCUUcaCGGGCACGAACaGCGggcCGACg -3'
miRNA:   3'- aacCGAA--GCUCGUGCUUG-CGCa--GCUG- -5'
28163 3' -54.7 NC_005887.1 + 32738 0.66 0.641277
Target:  5'- -cGGUUgcCGaAGCGCGcACGCG-CGACa -3'
miRNA:   3'- aaCCGAa-GC-UCGUGCuUGCGCaGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.