miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 496 0.66 0.629916
Target:  5'- -aGGgUUCGAGCgcagcaacaGCGGGCgGCG-CGGCg -3'
miRNA:   3'- aaCCgAAGCUCG---------UGCUUG-CGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 1049 0.67 0.584596
Target:  5'- -aGGCUUCGAGaucaaGACGCaGUCGAa -3'
miRNA:   3'- aaCCGAAGCUCgugc-UUGCG-CAGCUg -5'
28163 3' -54.7 NC_005887.1 + 1556 0.68 0.496504
Target:  5'- -cGGCcgCGccGCGCGAGCGCcgcacgccGUCGGCg -3'
miRNA:   3'- aaCCGaaGCu-CGUGCUUGCG--------CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 1689 0.66 0.663962
Target:  5'- --cGCccCGAGCACGAGCGCaagcugcgCGGCa -3'
miRNA:   3'- aacCGaaGCUCGUGCUUGCGca------GCUG- -5'
28163 3' -54.7 NC_005887.1 + 1832 0.66 0.652629
Target:  5'- -cGGCaucUUCGGcGaCACGAACGCGcCGGa -3'
miRNA:   3'- aaCCG---AAGCU-C-GUGCUUGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 2412 0.76 0.166257
Target:  5'- cUGGCUUCGAG-GCGAAgccCGCGcCGACg -3'
miRNA:   3'- aACCGAAGCUCgUGCUU---GCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 3084 0.71 0.368253
Target:  5'- aUGGCUUUGccCGCGGcgcuggccgcagGCGCGUUGACg -3'
miRNA:   3'- aACCGAAGCucGUGCU------------UGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 3479 0.7 0.414892
Target:  5'- cUGGCgcgcugaugaUCGAGCACGA---CGUCGGCa -3'
miRNA:   3'- aACCGa---------AGCUCGUGCUugcGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 5652 0.66 0.66283
Target:  5'- cUUGGCcUCGAcgaacugGCGCaGGucaGCGUCGGCg -3'
miRNA:   3'- -AACCGaAGCU-------CGUG-CUug-CGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 6130 0.67 0.607211
Target:  5'- aUGGCUacUCuGAGCACGAACaaccCGACg -3'
miRNA:   3'- aACCGA--AG-CUCGUGCUUGcgcaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 7221 0.67 0.573348
Target:  5'- -aGGCgcugUCG-GCGuCGGGCGCaUCGACc -3'
miRNA:   3'- aaCCGa---AGCuCGU-GCUUGCGcAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 7475 0.67 0.584596
Target:  5'- -cGGCggCGGGUGCGAccgugGCGaucguCGUCGGCg -3'
miRNA:   3'- aaCCGaaGCUCGUGCU-----UGC-----GCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 8022 0.68 0.551014
Target:  5'- -cGGCUacgcucaacUCGAuGUACGAcgACGUGcUCGACg -3'
miRNA:   3'- aaCCGA---------AGCU-CGUGCU--UGCGC-AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 8523 0.68 0.539945
Target:  5'- -cGGUUgcgcCGGGCGCucGAuCGCGUUGACg -3'
miRNA:   3'- aaCCGAa---GCUCGUG--CUuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 8950 0.66 0.629916
Target:  5'- -aGGUccgCGAGCGCGuACGgCGUCG-Cg -3'
miRNA:   3'- aaCCGaa-GCUCGUGCuUGC-GCAGCuG- -5'
28163 3' -54.7 NC_005887.1 + 9465 0.68 0.507225
Target:  5'- gUGGUcaCGGGUACGGugGCGaCGAa -3'
miRNA:   3'- aACCGaaGCUCGUGCUugCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 9806 0.7 0.424646
Target:  5'- gUGGgUgaUUGGGCccGCGAACGCGUCG-Ca -3'
miRNA:   3'- aACCgA--AGCUCG--UGCUUGCGCAGCuG- -5'
28163 3' -54.7 NC_005887.1 + 10195 0.73 0.2789
Target:  5'- -cGGUUucgUCGAGUGCGu-CGCGUCGAUg -3'
miRNA:   3'- aaCCGA---AGCUCGUGCuuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 10273 0.66 0.618557
Target:  5'- -cGGCg-CGGGCAUcGACGCGacgcacUCGACg -3'
miRNA:   3'- aaCCGaaGCUCGUGcUUGCGC------AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 12904 0.66 0.634461
Target:  5'- -cGGCacggCGAGCcagcacgccgguuucGCGAGCGCGUCc-- -3'
miRNA:   3'- aaCCGaa--GCUCG---------------UGCUUGCGCAGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.